Chen W, De Schutter E. (2017). Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. Frontiers in neuroinformatics. 11 [PubMed]

• Parallel STEPS: Large scale stochastic spatial reaction-diffusion simulat. (Chen & De Schutter 2017) [Model]

Hamer RD, Nicholas SC, Tranchina D, Lamb TD, Jarvinen JL. (2005). Toward a unified model of vertebrate rod phototransduction. Visual neuroscience. 22 [PubMed]

Hituri K, Linne ML. (2013). Comparison of models for IP3 receptor kinetics using stochastic simulations. PloS one. 8 [PubMed]

• IP3R model comparison (Hituri and Linne 2013) [Model]

Kilinc D, Demir A. (2015). Simulation of noise in neurons and neuronal circuits Proceedings of the IEEE/ACM international conference on computer-aided design (ICCAD).

• A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Kilinc D, Demir A. (2017). Noise in Neuronal and Electronic Circuits: A General Modeling Framework and Non-Monte Carlo Simulation Techniques. IEEE transactions on biomedical circuits and systems. 11 [PubMed]

• A neuronal circuit simulator for non Monte Carlo analysis of neuronal noise (Kilinc & Demir 2018) [Model]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Frontiers in computational neuroscience. 4 [PubMed]

McDougal RA, Hines ML, Lytton WW. (2013). Reaction-diffusion in the NEURON simulator. Frontiers in neuroinformatics. 7 [PubMed]

• Reaction-diffusion in the NEURON simulator (McDougal et al 2013) [Model]