Alle H, Roth A, Geiger JR. (2009). Energy-efficient action potentials in hippocampal mossy fibers. Science (New York, N.Y.). 325 [PubMed]

• Action potential reconstitution from measured current waveforms (Alle et al. 2009) [Model]

Attwell D, Gibb A. (2005). Neuroenergetics and the kinetic design of excitatory synapses. Nature reviews. Neuroscience. 6 [PubMed]

Attwell D, Laughlin SB. (2001). An energy budget for signaling in the grey matter of the brain. Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 21 [PubMed]

Baranauskas G, Martina M. (2006). Sodium currents activate without a Hodgkin-and-Huxley-type delay in central mammalian neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Sodium currents activate without a delay (Baranauskas and Martina 2006) [Model]

Bischofberger J, Geiger JR, Jonas P. (2002). Timing and efficacy of Ca2+ channel activation in hippocampal mossy fiber boutons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 22 [PubMed]

Buhl EH, Halasy K, Somogyi P. (1994). Diverse sources of hippocampal unitary inhibitory postsynaptic potentials and the number of synaptic release sites. Nature. 368 [PubMed]

Buhl EH et al. (1994). Physiological properties of anatomically identified axo-axonic cells in the rat hippocampus. Journal of neurophysiology. 71 [PubMed]

Carter BC, Bean BP. (2009). Sodium entry during action potentials of mammalian neurons: incomplete inactivation and reduced metabolic efficiency in fast-spiking neurons. Neuron. 64 [PubMed]

Chanda B, Asamoah OK, Bezanilla F. (2004). Coupling interactions between voltage sensors of the sodium channel as revealed by site-specific measurements. The Journal of general physiology. 123 [PubMed]

Colbert CM, Pan E. (2002). Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nature neuroscience. 5 [PubMed]

Colquhoun D, Hawkes AG. (1977). Relaxation and fluctuations of membrane currents that flow through drug-operated channels. Proceedings of the Royal Society of London. Series B, Biological sciences. 199 [PubMed]

Engel D, Jonas P. (2005). Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron. 45 [PubMed]

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN. (2010). Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nature neuroscience. 13 [PubMed]

• Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010) [Model]
• Action potential-evoked Na+ influx similar in axon and soma (Fleidervish et al. 2010) (Python) [Model]

Geiger JR et al. (2002). Patch-clamp recording in brain slices with improved slicer technology. Pflugers Archiv : European journal of physiology. 443 [PubMed]

HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]

• Squid axon (Hodgkin, Huxley 1952) (NEURON) [Model]
• Squid axon (Hodgkin, Huxley 1952) (SNNAP) [Model]
• Squid axon (Hodgkin, Huxley 1952) (LabAXON) [Model]
• Squid axon (Hodgkin, Huxley 1952) (SBML, XPP, other) [Model]
• Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language) [Model]

Han ZS, Buhl EH, Lörinczi Z, Somogyi P. (1993). A high degree of spatial selectivity in the axonal and dendritic domains of physiologically identified local-circuit neurons in the dentate gyrus of the rat hippocampus. The European journal of neuroscience. 5 [PubMed]

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hu W et al. (2009). Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nature neuroscience. 12 [PubMed]

• Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) [Model]

Isom LL et al. (1992). Primary structure and functional expression of the beta 1 subunit of the rat brain sodium channel. Science (New York, N.Y.). 256 [PubMed]

Keynes RD, Rojas E. (1976). The temporal and steady-state relationships between activation of the sodium conductance and movement of the gating particles in the squid giant axon. The Journal of physiology. 255 [PubMed]

Kole MH et al. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nature neuroscience. 11 [PubMed]

• Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008) [Model]

Kole MH, Letzkus JJ, Stuart GJ. (2007). Axon initial segment Kv1 channels control axonal action potential waveform and synaptic efficacy. Neuron. 55 [PubMed]

Kress GJ, Dowling MJ, Eisenman LN, Mennerick S. (2010). Axonal sodium channel distribution shapes the depolarized action potential threshold of dentate granule neurons. Hippocampus. 20 [PubMed]

Kress GJ, Dowling MJ, Meeks JP, Mennerick S. (2008). High threshold, proximal initiation, and slow conduction velocity of action potentials in dentate granule neuron mossy fibers. Journal of neurophysiology. 100 [PubMed]

Lorincz A, Nusser Z. (2010). Molecular identity of dendritic voltage-gated sodium channels. Science (New York, N.Y.). 328 [PubMed]

Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ. (1995). A model of spike initiation in neocortical pyramidal neurons. Neuron. 15 [PubMed]

• Spike Initiation in Neocortical Pyramidal Neurons (Mainen et al 1995) [Model]

Martina M, Jonas P. (1997). Functional differences in Na+ channel gating between fast-spiking interneurones and principal neurones of rat hippocampus. The Journal of physiology. 505 ( Pt 3) [PubMed]

Morgan K et al. (2000). beta 3: an additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics. Proceedings of the National Academy of Sciences of the United States of America. 97 [PubMed]

Oxford GS. (1981). Some kinetic and steady-state properties of sodium channels after removal of inactivation. The Journal of general physiology. 77 [PubMed]

Rush AM, Dib-Hajj SD, Waxman SG. (2005). Electrophysiological properties of two axonal sodium channels, Nav1.2 and Nav1.6, expressed in mouse spinal sensory neurones. The Journal of physiology. 564 [PubMed]

Sakmann B, Neher E. (1995). Geometric parameters of pipettes and membrane patches Single Channel Recording.

Schmidt-Hieber C, Jonas P, Bischofberger J. (2007). Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Dentate gyrus granule cell: subthreshold signal processing (Schmidt-Hieber et al. 2007) [Model]

Schmidt-Hieber C, Jonas P, Bischofberger J. (2008). Action potential initiation and propagation in hippocampal mossy fibre axons. The Journal of physiology. 586 [PubMed]

Shu Y, Hasenstaub A, Duque A, Yu Y, McCormick DA. (2006). Modulation of intracortical synaptic potentials by presynaptic somatic membrane potential. Nature. 441 [PubMed]

• Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Smith MR, Smith RD, Plummer NW, Meisler MH, Goldin AL. (1998). Functional analysis of the mouse Scn8a sodium channel. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Stuart G, Spruston N, Sakmann B, Häusser M. (1997). Action potential initiation and backpropagation in neurons of the mammalian CNS. Trends in neurosciences. 20 [PubMed]

Vandenberg CA, Bezanilla F. (1991). A sodium channel gating model based on single channel, macroscopic ionic, and gating currents in the squid giant axon. Biophysical journal. 60 [PubMed]

Yu FH et al. (2003). Sodium channel beta4, a new disulfide-linked auxiliary subunit with similarity to beta2. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Brette R. (2013). Sharpness of spike initiation in neurons explained by compartmentalization. PLoS computational biology. 9 [PubMed]

• Sharpness of spike initiation in neurons explained by compartmentalization (Brette 2013) [Model]

Chavlis S, Petrantonakis PC, Poirazi P. (2017). Dendrites of dentate gyrus granule cells contribute to pattern separation by controlling sparsity. Hippocampus. 27 [PubMed]

• Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017) [Model]

Hallermann S, de Kock CP, Stuart GJ, Kole MH. (2012). State and location dependence of action potential metabolic cost in cortical pyramidal neurons. Nature neuroscience. 15 [PubMed]

• State and location dependence of action potential metabolic cost (Hallermann et al., 2012) [Model]

Jaffe DB, Brenner R. (2018). A computational model for how the fast afterhyperpolarization paradoxically increases gain in regularly firing neurons. Journal of neurophysiology. 119 [PubMed]

• Paradoxical effect of fAHP amplitude on gain in dentate gyrus granule cells (Jaffe & Brenner 2018) [Model]

Ju H, Hines ML, Yu Y. (2016). Cable energy function of cortical axons. Scientific reports. 6 [PubMed]

Oláh VJ, Tarcsay G, Brunner J. (2021). Small size of recorded neuronal structures confines the accuracy in direct axonal voltage measurements. eNeuro. 8 [PubMed]

• Realistic amplifier model (Oláh et al. 2021) [Model]

Pezo D, Soudry D, Orio P. (2014). Diffusion approximation-based simulation of stochastic ion channels: which method to use? Frontiers in computational neuroscience. 8 [PubMed]

• Comparison of DA-based Stochastic Algorithms (Pezo et al. 2014) [Model]

Schmidt-Hieber C et al. (2017). Active dendritic integration as a mechanism for robust and precise grid cell firing. Nature neuroscience. 20 [PubMed]

• Active dendritic integration in robust and precise grid cell firing (Schmidt-Hieber et al 2017) [Model]

Schneider CJ, Cuntz H, Soltesz I. (2014). Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS computational biology. 10 [PubMed]

• Generation of granule cell dendritic morphology (Schneider et al. 2014) [Model]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife.

• GC model (Beining et al 2017) [Model]
• Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017) [Model]

Singh C, Levy WB. (2017). A consensus layer V pyramidal neuron can sustain interpulse-interval coding. PloS one. 12 [PubMed]

• Stochastic layer V pyramidal neuron: interpulse interval coding and noise (Singh & Levy 2017) [Model]