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• Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007) [Model]
• Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012) [Model]

Anderson WS, Kudela P, Weinberg S, Bergey GK, Franaszczuk PJ. (2009). Phase-dependent stimulation effects on bursting activity in a neural network cortical simulation. Epilepsy research. 84 [PubMed]

• Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012) [Model]

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Bernander O, Douglas RJ, Martin KA, Koch C. (1991). Synaptic background activity influences spatiotemporal integration in single pyramidal cells. Proceedings of the National Academy of Sciences of the United States of America. 88 [PubMed]

Brennan EKW, Sudhakar SK, Jedrasiak-Cape I, John TT, Ahmed OJ. (2020). Hyperexcitable Neurons Enable Precise and Persistent Information Encoding in the Superficial Retrosplenial Cortex. Cell reports. 30 [PubMed]

• Two populations of excitatory neurons in the superficial retrosplenial cortex (Brennan et al 2020) [Model]

Bush PC, Prince DA, Miller KD. (1999). Increased pyramidal excitability and NMDA conductance can explain posttraumatic epileptogenesis without disinhibition: a model. Journal of neurophysiology. 82 [PubMed]

• Cortical network model of posttraumatic epileptogenesis (Bush et al 1999) [Model]

Chemin J et al. (2002). Specific contribution of human T-type calcium channel isotypes (alpha(1G), alpha(1H) and alpha(1I)) to neuronal excitability. The Journal of physiology. 540 [PubMed]

D'Angelo E et al. (2001). Theta-frequency bursting and resonance in cerebellar granule cells: experimental evidence and modeling of a slow k+-dependent mechanism. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]

• Bursting and resonance in cerebellar granule cells (D'Angelo et al. 2001) [Model]

Daneshzand M, Faezipour M, Barkana BD. (2017). Hyperbolic Modeling of Subthalamic Nucleus Cells to Investigate the Effect of Dopamine Depletion. Computational intelligence and neuroscience. 2017 [PubMed]

• Hyperbolic model (Daneshzand et al 2017) [Model]

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Destexhe A. (1999). Can GABAA conductances explain the fast oscillation frequency of absence seizures in rodents? The European journal of neuroscience. 11 [PubMed]

Destexhe A. (2009). Self-sustained asynchronous irregular states and Up-Down states in thalamic, cortical and thalamocortical networks of nonlinear integrate-and-fire neurons. Journal of computational neuroscience. 27 [PubMed]

• Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009) [Model]

Destexhe A, Contreras D, Steriade M. (1998). Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. Journal of neurophysiology. 79 [PubMed]

• Pyramidal Neuron: Deep, Thalamic Relay and Reticular, Interneuron (Destexhe et al 1998, 2001) [Model]

Destexhe A, Contreras D, Steriade M. (1999). Cortically-induced coherence of a thalamic-generated oscillation. Neuroscience. 92 [PubMed]

Destexhe A, Contreras D, Steriade M. (2001). LTS cells in cerebral cortex and their role in generating spike-and-wave oscillations. Neurocomputing. 38

• Pyramidal Neuron: Deep, Thalamic Relay and Reticular, Interneuron (Destexhe et al 1998, 2001) [Model]

Doiron B, Laing C, Longtin A, Maler L. (2002). Ghostbursting: a novel neuronal burst mechanism. Journal of computational neuroscience. 12 [PubMed]

Doiron B, Longtin A, Turner RW, Maler L. (2001). Model of gamma frequency burst discharge generated by conditional backpropagation. Journal of neurophysiology. 86 [PubMed]

Elaagouby A, Yuste R. (1999). Role of calcium electrogenesis in apical dendrites: generation of intrinsic oscillations by an axial current. Journal of computational neuroscience. 7 [PubMed]

Fransén E, Lansner A. (1998). A model of cortical associative memory based on a horizontal network of connected columns. Network (Bristol, England). 9 [PubMed]

Fröhlich F, Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ. (2006). Slow state transitions of sustained neural oscillations by activity-dependent modulation of intrinsic excitability. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Gutkin B, Ermentrout GB, Rudolph M. (2003). Spike generating dynamics and the conditions for spike-time precision in cortical neurons. Journal of computational neuroscience. 15 [PubMed]

Helmstaedter M, Sakmann B, Feldmeyer D. (2009). The relation between dendritic geometry, electrical excitability, and axonal projections of L2/3 interneurons in rat barrel cortex. Cerebral cortex (New York, N.Y. : 1991). 19 [PubMed]

• Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) [Model]

Hô N, Destexhe A. (2000). Synaptic background activity enhances the responsiveness of neocortical pyramidal neurons. Journal of neurophysiology. 84 [PubMed]

Izhikevich EM. (2003). Simple model of spiking neurons. IEEE transactions on neural networks. 14 [PubMed]

• Artificial neuron model (Izhikevich 2003, 2004, 2007) [Model]

Izhikevich EM. (2004). Which model to use for cortical spiking neurons? IEEE transactions on neural networks. 15 [PubMed]

• Artificial neuron model (Izhikevich 2003, 2004, 2007) [Model]

Izhikevich EM. (2007). Solving the distal reward problem through linkage of STDP and dopamine signaling. Cerebral cortex (New York, N.Y. : 1991). 17 [PubMed]

• Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007) [Model]

Kager H, Wadman WJ, Somjen GG. (2007). Seizure-like afterdischarges simulated in a model neuron. Journal of computational neuroscience. 22 [PubMed]

Kim HG, Connors BW. (1993). Apical dendrites of the neocortex: correlation between sodium- and calcium-dependent spiking and pyramidal cell morphology. The Journal of neuroscience : the official journal of the Society for Neuroscience. 13 [PubMed]

Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K. (2014). Modulatory effects of inhibition on persistent activity in a cortical microcircuit model. Frontiers in neural circuits. 8 [PubMed]

• Pyramidal neuron, fast, regular, and irregular spiking interneurons (Konstantoudaki et al 2014) [Model]

Kumar A, Schrader S, Aertsen A, Rotter S. (2008). The high-conductance state of cortical networks. Neural computation. 20 [PubMed]

Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]

• Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) [Model]

Lien CC, Martina M, Schultz JH, Ehmke H, Jonas P. (2002). Gating, modulation and subunit composition of voltage-gated K(+) channels in dendritic inhibitory interneurones of rat hippocampus. The Journal of physiology. 538 [PubMed]

• CA1 interneuron: K currents (Lien et al 2002) [Model]

Linaro D, Ocker GK, Doiron B, Giugliano M. (2019). Correlation Transfer by Layer 5 Cortical Neurons Under Recreated Synaptic Inputs In Vitro. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• L5 cortical neurons with recreated synaptic inputs in vitro correlation transfer (Linaro et al 2019) [Model]

Lytton WW, Sejnowski TJ. (1991). Simulations of cortical pyramidal neurons synchronized by inhibitory interneurons. Journal of neurophysiology. 66 [PubMed]

Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]

• Influence of dendritic structure on neocortical neuron firing patterns (Mainen and Sejnowski 1996) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Mensi S et al. (2012). Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms. Journal of neurophysiology. 107 [PubMed]

• Extraction and classification of three cortical neuron types (Mensi et al. 2012) [Model]

Mondal A, Upadhyay RK. (2018). Diverse neuronal responses of a fractional-order Izhikevich model: journey from chattering to fast spiking Nonlinear Dynamics. 91

Mosher CP et al. (2020). Cellular Classes in the Human Brain Revealed In Vivo by Heartbeat-Related Modulation of the Extracellular Action Potential Waveform. Cell reports. 30 [PubMed]

• Cellular classes revealed by heartbeat-related modulation of extracellular APs (Mosher et al 2020) [Model]

Murakami S, Okada Y. (2006). Contributions of principal neocortical neurons to magnetoencephalography and electroencephalography signals. The Journal of physiology. 575 [PubMed]

Nandy AS, Nassi JJ, Reynolds JH. (2017). Laminar Organization of Attentional Modulation in Macaque Visual Area V4. Neuron. 93 [PubMed]

Pospischil M et al. (2008). Minimal Hodgkin-Huxley type models for different classes of cortical and thalamic neurons. Biological cybernetics. 99 [PubMed]

• Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008) [Model]

Prescott SA, De Koninck Y. (2005). Integration time in a subset of spinal lamina I neurons is lengthened by sodium and calcium currents acting synergistically to prolong subthreshold depolarization. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

• Tonic neuron in spinal lamina I: prolongation of subthreshold depol. (Prescott and De Koninck 2005) [Model]

Prescott SA, De Koninck Y, Sejnowski TJ. (2008). Biophysical basis for three distinct dynamical mechanisms of action potential initiation. PLoS computational biology. 4 [PubMed]

• Dynamics of Spike Initiation (Prescott et al. 2008) [Model]

Puigbò JY et al. (2018). Cholinergic Behavior State-Dependent Mechanisms of Neocortical Gain Control: a Neurocomputational Study. Molecular neurobiology. 55 [PubMed]

Ramaswamy S et al. (2015). The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in neural circuits. 9 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Roque AC, Oliveira RF. (). A biologically plausible neural network model of the primate primary visual system. Neurocomputing. 44-46

Rulkov NF, Timofeev I, Bazhenov M. (2004). Oscillations in large-scale cortical networks: map-based model. Journal of computational neuroscience. 17 [PubMed]

• Large cortex model with map-based neurons (Rulkov et al 2004) [Model]

Schaefer AT, Larkum ME, Sakmann B, Roth A. (2003). Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. Journal of neurophysiology. 89 [PubMed]

• Pyramidal neuron coincidence detection tuned by dendritic branching pattern (Schaefer et al 2003) [Model]

Sharma SK, Mondal A, Mondal A, Upadhyay RK, Hens C. (2020). Emergence of bursting in a network of memory dependent excitable and spiking leech-heart neurons. Journal of the Royal Society, Interface. 17 [PubMed]

• Leech Heart Interneuron model (Sharma et al 2020) [Model]

Sidiropoulou K, Poirazi P. (2012). Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons. PLoS computational biology. 8 [PubMed]

• Layer V PFC pyramidal neuron used to study persistent activity (Sidiropoulou & Poirazi 2012) [Model]

Somjen GG, Kager H, Wadman WJ. (2008). Computer simulations of neuron-glia interactions mediated by ion flux. Journal of computational neuroscience. 25 [PubMed]

• Computer simulations of neuron-glia interactions mediated by ion flux (Somjen et al. 2008) [Model]

Stoop R et al. (2002). Collective bursting in layer IV. Synchronization by small thalamic inputs and recurrent connections. Brain research. Cognitive brain research. 13 [PubMed]

Zou Q, Bornat Y, Tomas J, Renaud S, Destexhe A. (2006). Real-time simulations of networks of Hodgkin-Huxley neurons using analog circuits Neurocomputing. 69

van Elburg RA, van Ooyen A. (2010). Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS computational biology. 6 [PubMed]

• Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010) [Model]