Bush PC, Prince DA, Miller KD. (1999). Increased pyramidal excitability and NMDA conductance can explain posttraumatic epileptogenesis without disinhibition: a model. Journal of neurophysiology. 82 [PubMed]

• Cortical network model of posttraumatic epileptogenesis (Bush et al 1999) [Model]

Davison AP, Feng J, Brown D. (2003). Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. Journal of neurophysiology. 90 [PubMed]

• Olfactory Bulb Network (Davison et al 2003) [Model]

Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. (2006). Parallel network simulations with NEURON. Journal of computational neuroscience. 21 [PubMed]

• Parallel network simulations with NEURON (Migliore et al 2006) [Model]

Santhakumar V, Aradi I, Soltesz I. (2005). Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. Journal of neurophysiology. 93 [PubMed]

• Dentate gyrus network model (Santhakumar et al 2005) [Model]
• Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

García-Grajales JA, Rucabado G, García-Dopico A, Peña JM, Jérusalem A. (2015). Neurite, a finite difference large scale parallel program for the simulation of electrical signal propagation in neurites under mechanical loading. PloS one. 10 [PubMed]

• Neurite: electrophysiological-mechanical coupling simulation framework (Garcia-Grajales et al 2015) [Model]

Hines ML, Davison AP, Muller E. (2009). NEURON and Python. Frontiers in neuroinformatics. 3 [PubMed]

• NEURON + Python (Hines et al. 2009) [Model]

Hines ML, Eichner H, Schürmann F. (2008). Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. Journal of computational neuroscience. 25 [PubMed]

• Cell splitting in neural networks extends strong scaling (Hines et al. 2008) [Model]

Kumaravelu K, Oza CS, Behrend CE, Grill WM. (2018). Model-based deconstruction of cortical evoked potentials generated by subthalamic nucleus deep brain stimulation. Journal of neurophysiology. 120 [PubMed]

• Deconstruction of cortical evoked potentials generated by subthalamic DBS (Kumaravelu et al 2018) [Model]

Kumaravelu K, Sombeck J, Miller LE, Bensmaia SJ, Grill WM. (2022). Stoney vs. Histed: Quantifying the spatial effects of intracortical microstimulation Brain stimulation. 15 [PubMed]

• Stoney vs Histed: Quantifying spatial effects of intracortical microstims (Kumaravelu et al 2022) [Model]

Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural computation. 28 [PubMed]

• Parallelizing large networks in NEURON (Lytton et al. 2016) [Model]

Masoli S, Solinas S, D'Angelo E. (2015). Action potential processing in a detailed Purkinje cell model reveals a critical role for axonal compartmentalization. Frontiers in cellular neuroscience. 9 [PubMed]

• A detailed Purkinje cell model (Masoli et al 2015) [Model]

Schneider CJ, Cuntz H, Soltesz I. (2014). Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS computational biology. 10 [PubMed]

• Generation of granule cell dendritic morphology (Schneider et al. 2014) [Model]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife.

• GC model (Beining et al 2017) [Model]
• Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017) [Model]

Soltesz I, Armstrong C, Raikov I, Bezaire M, Burk K. (2016). SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON bioRxiv.

• Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016) [Model]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.

• Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Tikidji-Hamburyan RA, El-Ghazawi TA, Narayana V, Bozkus Z. (2017). Software for Brain Network Simulations: A Comparative Study Front. Neuroinform..

• Brain networks simulators - a comparative study (Tikidji-Hamburyan et al 2017) [Model]

Tsai D et al. (2012). Responses of retinal ganglion cells to extracellular electrical stimulation, from single cell to population: model-based analysis. PloS one. 7 [PubMed]

• Retinal ganglion cells responses and activity (Tsai et al 2012, Guo et al 2016) [Model]