Phenomenological models of NaV1.5: Hodgkin-Huxley and kinetic formalisms (Andreozzi et al 2019)


Andreozzi E, Carannante I, D'Addio G, Cesarelli M, Balbi P. (2019). Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms Scientific reports. 9 [PubMed]

See more from authors: Andreozzi E · Carannante I · D'Addio G · Cesarelli M · Balbi P

References and models cited by this paper

Arkhipov A et al. (2018). Visual physiology of the layer 4 cortical circuit in silico. PLoS computational biology. 14 [PubMed]

Balbi P, Massobrio P, Hellgren Kotaleski J. (2017). A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms. PLoS computational biology. 13 [PubMed]

Belehrádek J. (1935). Temperature and living matter.

Bezanilla F. (2008). Ion channels: from conductance to structure. Neuron. 60 [PubMed]

Borg-graham L. (1999). Interpretations of data and mechanisms for hippocampal pyramidal cell models Cerebral Cortex cortical Models. 13

Brent R. (1976). A new algorithm for minimizing a function of several variables without calculating derivatives. Algorithms For Minimization Without Derivatives.

Börjesson SI, Elinder F. (2008). Structure, function, and modification of the voltage sensor in voltage-gated ion channels. Cell biochemistry and biophysics. 52 [PubMed]

Cannon RC, D'Alessandro G. (2006). The ion channel inverse problem: neuroinformatics meets biophysics. PLoS computational biology. 2 [PubMed]

Cavarretta F et al. (2018). Parallel odor processing by mitral and middle tufted cells in the olfactory bulb. Scientific reports. 8 [PubMed]

Churchland PS, Sejnowski TJ. (2016). Blending computational and experimental neuroscience. Nature reviews. Neuroscience. 17 [PubMed]

Cooley JW, Dodge FA. (1973). Action Potential of the Motorneuron. IBM J Res Dev. 17

Destexhe A, Huguenard JR. (2010). Computational modeling methods for neuroscientists.

Destexhe A, Mainen ZF, Sejnowski TJ. (1994). Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. Journal of computational neuroscience. 1 [PubMed]

Gentet LJ, Stuart GJ, Clements JD. (2000). Direct measurement of specific membrane capacitance in neurons. Biophysical journal. 79 [PubMed]

Gurkiewicz M, Korngreen A. (2007). A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm. PLoS computational biology. 3 [PubMed]

HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]

HODGKIN AL, HUXLEY AF. (1952). The dual effect of membrane potential on sodium conductance in the giant axon of Loligo. The Journal of physiology. 116 [PubMed]

Hartveit E et al. (2018). AMPA receptors at ribbon synapses in the mammalian retina: kinetic models and molecular identity. Brain structure & function. 223 [PubMed]

Hille B. (1992). Ion Channels of Excitable Membranes.

Hines ML, Carnevale NT. (2006). The NEURON Book.

Kohn MC. (1989). Computer modeling at the National Biomedical Simulation Resource Computers And Mathematics With Applications. 18

Kozlov AK, Kardamakis AA, Hellgren Kotaleski J, Grillner S. (2014). Gating of steering signals through phasic modulation of reticulospinal neurons during locomotion. Proceedings of the National Academy of Sciences of the United States of America. 111 [PubMed]

Kuo CC, Bean BP. (1994). Na+ channels must deactivate to recover from inactivation. Neuron. 12 [PubMed]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

Maurice N et al. (2004). D2 dopamine receptor-mediated modulation of voltage-dependent Na+ channels reduces autonomous activity in striatal cholinergic interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

McDougal RA et al. (2017). Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. Journal of computational neuroscience. 42 [PubMed]

Menon V, Spruston N, Kath WL. (2009). A state-mutating genetic algorithm to design ion-channel models. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

Meunier C, Segev I. (2002). Playing the devil's advocate: is the Hodgkin-Huxley model useful? Trends in neurosciences. 25 [PubMed]

Milescu LS, Akk G, Sachs F. (2005). Maximum likelihood estimation of ion channel kinetics from macroscopic currents. Biophysical journal. 88 [PubMed]

Neher E, Sakmann B. (1976). Single-channel currents recorded from membrane of denervated frog muscle fibres. Nature. 260 [PubMed]

Patlak J. (1991). Molecular kinetics of voltage-dependent Na+ channels. Physiological reviews. 71 [PubMed]

Southan C et al. (2016). The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands. Nucleic acids research. 44 [PubMed]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.

Strassberg AF, Defelice LJ. (1993). Limitations of the Hodgkin-Huxley formalism: eects of single channel kinetics on transmembrane voltage dynamics Neural Comput. 5

Teed ZR, Silva JR. (2016). A computationally efficient algorithm for fitting ion channel parameters. MethodsX. 3 [PubMed]

Traub RD et al. (2005). Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. Journal of neurophysiology. 93 [PubMed]

Wu L, Nishiyama K, Hollyfield JG, Wang Q. (2002). Localization of Nav1.5 sodium channel protein in the mouse brain. Neuroreport. 13 [PubMed]

Zhang Z et al. (2013). Kinetic model of Nav1.5 channel provides a subtle insight into slow inactivation associated excitability in cardiac cells. PloS one. 8 [PubMed]

References and models that cite this paper
This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.