Ache JM et al. (2019). Neural Basis for Looming Size and Velocity Encoding in the Drosophila Giant Fiber Escape Pathway. Current biology : CB. 29 [PubMed]

Ait Ouares K, Filipis L, Tzilivaki A, Poirazi P, Canepari M. (2019). Two Distinct Sets of Ca2+ and K+ Channels Are Activated at Different Membrane Potentials by the Climbing Fiber Synaptic Potential in Purkinje Neuron Dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• Cerebellum Purkinje cell: dendritic ion channels activated by climbing fibre (Ait Ouares et al 2019) [Model]

Andreozzi E, Carannante I, D'Addio G, Cesarelli M, Balbi P. (2019). Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms Scientific reports. 9 [PubMed]

• Phenomenological models of NaV1.5: Hodgkin-Huxley and kinetic formalisms (Andreozzi et al 2019) [Model]

Balbi P, Massobrio P, Hellgren Kotaleski J. (2017). A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms. PLoS computational biology. 13 [PubMed]

• A single kinetic model for all human voltage-gated sodium channels (Balbi et al, 2017) [Model]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]

Cao F, Ralph MR, Stinchcombe AR. (2022). A Phenomenological Mouse Circadian Pacemaker Model Journal of biological rhythms. 37 [PubMed]

• Phenomenological model of the mouse circadian pacemaker (Cao et al., 2022) [Model]

Chrysanthidis N, Fiebig F, Lansner A. (2019). Introducing double bouquet cells into a modular cortical associative memory model Journal of Computational Neuroscience.

• An electrophysiological model of GABAergic double bouquet cells (Chrysanthidis et al. 2019) [Model]

Crone JC et al. (2019). Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator Frontiers in Neuroinformatics. 13

• Large scale neocortical model for PGENESIS (Crone et al 2019) [Model]
• ACnet23 primary auditory cortex model (Beeman et al 2019) [Model]

Danner SM, Shevtsova NA, Frigon A, Rybak IA. (2017). Computational modeling of spinal circuits controlling limb coordination and gaits in quadrupeds. eLife. 6 [PubMed]

• Spinal circuits controlling limb coordination and gaits in quadrupeds (Danner et al 2017) [Model]

Denizot A, Arizono M, Nägerl UV, Soula H, Berry H. (2019). Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLoS computational biology. 15 [PubMed]

• Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019) [Model]

Diekman CO, Thomas PJ, Wilson CG. (2017). Eupnea, tachypnea, and autoresuscitation in a closed-loop respiratory control model. Journal of neurophysiology. 118 [PubMed]

• Respiratory control model with brainstem CPG and sensory feedback (Diekman, Thomas, and Wilson 2017) [Model]

Ebner C, Clopath C, Jedlicka P, Cuntz H. (2019). Unifying Long-Term Plasticity Rules for Excitatory Synapses by Modeling Dendrites of Cortical Pyramidal Neurons. Cell reports. 29 [PubMed]

• Four-pathway phenomenological synaptic plasticity model (Ebner et al. 2019) [Model]

Füzesi T et al. (2023). Hypothalamic CRH neurons represent physiological memory of positive and negative experience. Nature communications. 14 [PubMed]

• Hypothalamic CRH neurons represent physiological memory of positive and negative experience (Füzesi et al., 2023) [Model]

Geerts JP, Chersi F, Stachenfeld KL, Burgess N. (2020). A general model of hippocampal and dorsal striatal learning and decision making. Proceedings of the National Academy of Sciences of the United States of America. 117 [PubMed]

• A general model of hippocampal and dorsal striatal learning and decision making (Geerts et al 2020) [Model]

Ibañez S, Luebke JI, Chang W, Draguljić D, Weaver CM. (2019). Network Models Predict That Pyramidal Neuron Hyperexcitability and Synapse Loss in the dlPFC Lead to Age-Related Spatial Working Memory Impairment in Rhesus Monkeys. Frontiers in computational neuroscience. 13 [PubMed]

• Bump Attractor Models: Delayed Response & Recognition Span - spatial condition (Ibanez et al 2019) [Model]

Khatri SN, Wu WC, Yang Y, Pugh JR. (2019). Mechanisms of GABAB receptor enhancement of extrasynaptic GABAA receptor currents in cerebellar granule cells. Scientific reports. 9 [PubMed]

Liu Y, Milton J, Campbell SA. (2019). Outgrowing seizures in Childhood Absence Epilepsy: time delays and bistability. Journal of computational neuroscience. 46 [PubMed]

• Thalamocortical loop with delay for investigation of absence epilepsy (Liu et al 2019) [Model]

Lombardi A, Jedlicka P, Luhmann HJ, Kilb W. (2019). Interactions Between Membrane Resistance, GABA-A Receptor Properties, Bicarbonate Dynamics and Cl-Transport Shape Activity-Dependent Changes of Intracellular Cl- Concentration International journal of molecular sciences. 20 [PubMed]

• Factors contribution to GDP-induced [Cl-]i transients (Lombardi et al 2019) [Model]

Malik-Sheriff RS et al. (2020). BioModels-15 years of sharing computational models in life science. Nucleic acids research. 48 [PubMed]

Manis PB, Campagnola L. (2018). A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hearing research. 360 [PubMed]

• Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018) [Model]

Manninen T, Saudargiene A, Linne ML. (2020). Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex. PLoS computational biology. 16 [PubMed]

• A synapse model for developing somatosensory cortex (Manninen et al 2020) [Model]

McDougal RA, Dalal I, Morse TM, Shepherd GM. (2019). Automated Metadata Suggestion During Repository Submission. Neuroinformatics. 17 [PubMed]

• Automated metadata suggester (McDougal et al 2018) [Model]

Muddapu VR, Mandali A, Chakravarthy VS, Ramaswamy S. (2019). A Computational Model of Loss of Dopaminergic Cells in Parkinson's Disease Due to Glutamate-Induced Excitotoxicity. Frontiers in neural circuits. 13 [PubMed]

• Excitotoxic loss of dopaminergic cells in PD (Muddapu et al 2019) [Model]

Neumaier F, Alpdogan S, Hescheler J, Schneider T. (2020). Zn2+-induced changes in Cav2.3 channel function: An electrophysiological and modeling study The Journal of general physiology. 152 [PubMed]

• A Markov model of human Cav2.3 channels and their modulation by Zn2+ (Neumaier et al 2020) [Model]

Newton AJH, McDougal RA, Hines ML, Lytton WW. (2018). Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics. Frontiers in neuroinformatics. 12 [PubMed]

• Using NEURON for reaction-diffusion modeling of extracellular dynamics (Newton et al 2018) [Model]

Pelot NA et al. (2021). Excitation Properties of Computational Models of Unmyelinated Peripheral Axons Journal of neurophysiology. 125 [PubMed]

• Excitation Properties of Computational Models of Unmyelinated Peripheral Axons (Pelot et al., 2021) [Model]

Reed EJ et al. (2020). Paranoia as a deficit in non-social belief updating. eLife. 9 [PubMed]

• Paranoia as a deficit in non-social belief updating (Reed et al 2020) [Model]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife.

• GC model (Beining et al 2017) [Model]
• Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017) [Model]

Sherfey JS et al. (2018). DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. Frontiers in neuroinformatics. 12 [PubMed]

• DynaSim: a MATLAB toolbox for neural modeling and simulation (Sherfey et al 2018) [Model]

Strüber M, Sauer JF, Jonas P, Bartos M. (2017). Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. Nature communications. 8 [PubMed]

• Distance-dependent inhibition in the hippocampus (Strüber et al. 2017) [Model]

Tomko M, Benuskova L, Jedlicka P. (2021). A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit. Scientific reports. 11 [PubMed]

• Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21) [Model]

Viertel R, Borisyuk A. (2019). A Computational model of the mammalian external tufted cell. Journal of theoretical biology. 462 [PubMed]

• External Tufted Cell Model (Ryan Viertel, Alla Borisyuk 2019) [Model]

Zemel BM et al. (2021). Resurgent Na+ currents promote ultrafast spiking in projection neurons that drive fine motor control Nature communications. 12 [PubMed]

• Resurgent sodium transient current in zebra finch RA (Zemel et al., 2021) [Model]