Amitai Y, Friedman A, Connors BW, Gutnick MJ. (1993). Regenerative activity in apical dendrites of pyramidal cells in neocortex. Cerebral cortex (New York, N.Y. : 1991). 3 [PubMed]
Antic S, Major G, Zecevic D. (1999). Fast optical recordings of membrane potential changes from dendrites of pyramidal neurons. Journal of neurophysiology. 82 [PubMed]
Antic SD. (2003). Action potentials in basal and oblique dendrites of rat neocortical pyramidal neurons. The Journal of physiology. 550 [PubMed]
Ariav G, Polsky A, Schiller J. (2003). Submillisecond precision of the input-output transformation function mediated by fast sodium dendritic spikes in basal dendrites of CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]
Bekkers JM. (2000). Distribution and activation of voltage-gated potassium channels in cell-attached and outside-out patches from large layer 5 cortical pyramidal neurons of the rat. The Journal of physiology. 525 Pt 3 [PubMed]
Bekkers JM. (2000). Properties of voltage-gated potassium currents in nucleated patches from large layer 5 cortical pyramidal neurons of the rat. The Journal of physiology. 525 Pt 3 [PubMed]
Bekkers JM, Delaney AJ. (2001). Modulation of excitability by alpha-dendrotoxin-sensitive potassium channels in neocortical pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]
Berger T, Larkum ME, Lüscher HR. (2001). High I(h) channel density in the distal apical dendrite of layer V pyramidal cells increases bidirectional attenuation of EPSPs. Journal of neurophysiology. 85 [PubMed]
Bhalla US, Bower JM. (1993). Exploring parameter space in detailed single neuron models: simulations of the mitral and granule cells of the olfactory bulb. Journal of neurophysiology. 69 [PubMed]
Bischofberger J, Jonas P. (1997). Action potential propagation into the presynaptic dendrites of rat mitral cells. The Journal of physiology. 504 ( Pt 2) [PubMed]
Brown AM, Sayer RJ, Schwindt PC, Crill WE. (1994). P-type calcium channels in rat neocortical neurones. The Journal of physiology. 475 [PubMed]
Brown AM, Schwindt PC, Crill WE. (1993). Voltage dependence and activation kinetics of pharmacologically defined components of the high-threshold calcium current in rat neocortical neurons. Journal of neurophysiology. 70 [PubMed]
Brown AM, Schwindt PC, Crill WE. (1994). Different voltage dependence of transient and persistent Na+ currents is compatible with modal-gating hypothesis for sodium channels. Journal of neurophysiology. 71 [PubMed]
Chen WR, Midtgaard J, Shepherd GM. (1997). Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells. Science (New York, N.Y.). 278 [PubMed]
Chen WR, Shen GY, Shepherd GM, Hines ML, Midtgaard J. (2002). Multiple modes of action potential initiation and propagation in mitral cell primary dendrite. Journal of neurophysiology. 88 [PubMed]
Colbert CM, Pan E. (2002). Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nature neuroscience. 5 [PubMed]
Denk W et al. (1994). Anatomical and functional imaging of neurons using 2-photon laser scanning microscopy. Journal of neuroscience methods. 54 [PubMed]
Eichler_West RM. (1996). On the Development and Interpretation of Parameter Manifolds for Biophysically Robust Compartments Model of CA3 Hippocampal Neurons PhD Thesis.
Fleidervish IA, Friedman A, Gutnick MJ. (1996). Slow inactivation of Na+ current and slow cumulative spike adaptation in mouse and guinea-pig neocortical neurones in slices. The Journal of physiology. 493 ( Pt 1) [PubMed]
Fleidervish IA, Gutnick MJ. (1996). Kinetics of slow inactivation of persistent sodium current in layer V neurons of mouse neocortical slices. Journal of neurophysiology. 76 [PubMed]
Foehring RC. (1996). Serotonin modulates N- and P-type calcium currents in neocortical pyramidal neurons via a membrane-delimited pathway. Journal of neurophysiology. 75 [PubMed]
Foehring RC, Armstrong WE. (1996). Pharmacological dissection of high-voltage-activated Ca2+ current types in acutely dissociated rat supraoptic magnocellular neurons. Journal of neurophysiology. 76 [PubMed]
Foehring RC, Mermelstein PG, Song WJ, Ulrich S, Surmeier DJ. (2000). Unique properties of R-type calcium currents in neocortical and neostriatal neurons. Journal of neurophysiology. 84 [PubMed]
Foehring RC, Scroggs RS. (1994). Multiple high-threshold calcium currents in acutely isolated rat amygdaloid pyramidal cells. Journal of neurophysiology. 71 [PubMed]
Foehring RC, Waters RS. (1991). Contributions of low-threshold calcium current and anomalous rectifier (Ih) to slow depolarizations underlying burst firing in human neocortical neurons in vitro. Neuroscience letters. 124 [PubMed]
Golding NL, Staff NP, Spruston N. (2002). Dendritic spikes as a mechanism for cooperative long-term potentiation. Nature. 418 [PubMed]
Goldman MS, Golowasch J, Marder E, Abbott LF. (2001). Global structure, robustness, and modulation of neuronal models. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]
Golowasch J, Goldman MS, Abbott LF, Marder E. (2002). Failure of averaging in the construction of a conductance-based neuron model. Journal of neurophysiology. 87 [PubMed]
HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]
Haupt RL, Haupt SE. (1998). Practical Genetic Algorithms.
Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]
Hines ML, Carnevale NT. (2000). Expanding NEURON's repertoire of mechanisms with NMODL. Neural computation. 12 [PubMed]
Hoffman DA, Magee JC, Colbert CM, Johnston D. (1997). K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature. 387 [PubMed]
Häusser M, Mel B. (2003). Dendrites: bug or feature? Current opinion in neurobiology. 13 [PubMed]
Häusser M, Stuart G, Racca C, Sakmann B. (1995). Axonal initiation and active dendritic propagation of action potentials in substantia nigra neurons. Neuron. 15 [PubMed]
Johnston D. (1999). Functional properties of hippocampal dendrites Dev Neuropsychol. 16
Johnston D et al. (2003). Active dendrites, potassium channels and synaptic plasticity. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 358 [PubMed]
Johnston D, Magee JC, Colbert CM, Cristie BR. (1996). Active properties of neuronal dendrites. Annual review of neuroscience. 19 [PubMed]
Kirkpatrick S, Gelatt CD, Vecchi MP. (1983). Optimization by simulated annealing. Science (New York, N.Y.). 220 [PubMed]
Larkum ME, Zhu JJ, Sakmann B. (1999). A new cellular mechanism for coupling inputs arriving at different cortical layers. Nature. 398 [PubMed]
Larkum ME, Zhu JJ, Sakmann B. (2001). Dendritic mechanisms underlying the coupling of the dendritic with the axonal action potential initiation zone of adult rat layer 5 pyramidal neurons. The Journal of physiology. 533 [PubMed]
Lasser-Ross N, Miyakawa H, Lev-Ram V, Young SR, Ross WN. (1991). High time resolution fluorescence imaging with a CCD camera. Journal of neuroscience methods. 36 [PubMed]
Maex R, Lemasson G. (2001). Introduction to equation solving and parameter fitting. Computational neuroscience: Realistic modelling for experimentalists. 125
Magee J, Hoffman D, Colbert C, Johnston D. (1998). Electrical and calcium signaling in dendrites of hippocampal pyramidal neurons. Annual review of physiology. 60 [PubMed]
Magee JC. (1999). Dendritic lh normalizes temporal summation in hippocampal CA1 neurons. Nature neuroscience. 2 [PubMed]
Magee JC, Avery RB, Christie BR, Johnston D. (1996). Dihydropyridine-sensitive, voltage-gated Ca2+ channels contribute to the resting intracellular Ca2+ concentration of hippocampal CA1 pyramidal neurons. Journal of neurophysiology. 76 [PubMed]
Magee JC, Johnston D. (1995). Characterization of single voltage-gated Na+ and Ca2+ channels in apical dendrites of rat CA1 pyramidal neurons. The Journal of physiology. 487 [PubMed]
Magee JC, Johnston D. (1997). A synaptically controlled, associative signal for Hebbian plasticity in hippocampal neurons. Science (New York, N.Y.). 275 [PubMed]
Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ. (1995). A model of spike initiation in neocortical pyramidal neurons. Neuron. 15 [PubMed]
Markram H, Lübke J, Frotscher M, Sakmann B. (1997). Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs. Science (New York, N.Y.). 275 [PubMed]
Martina M, Vida I, Jonas P. (2000). Distal initiation and active propagation of action potentials in interneuron dendrites. Science (New York, N.Y.). 287 [PubMed]
Mel BW. (2002). Neurobiology. What the synapse tells the neuron. Science (New York, N.Y.). 295 [PubMed]
Migliore M, Shepherd GM. (2002). Emerging rules for the distributions of active dendritic conductances. Nature reviews. Neuroscience. 3 [PubMed]
Mitchell M. (1996). An Introduction to Genetic Algorithms.
Momiyama A. (2000). Distinct synaptic and extrasynaptic NMDA receptors identified in dorsal horn neurones of the adult rat spinal cord. The Journal of physiology. 523 Pt 3 [PubMed]
Poirazi P, Mel BW. (2001). Impact of active dendrites and structural plasticity on the memory capacity of neural tissue. Neuron. 29 [PubMed]
Polsky A, Mel BW, Schiller J. (2004). Computational subunits in thin dendrites of pyramidal cells. Nature neuroscience. 7 [PubMed]
Press WH, Teukolsky SA, Flannery BP, Vellerling WT. (1992). Numerical Recipes In C: The Art Of Scientific Computing.
Rhodes PA, Llinás RR. (2001). Apical tuft input efficacy in layer 5 pyramidal cells from rat visual cortex. The Journal of physiology. 536 [PubMed]
Sayer RJ, Brown AM, Schwindt PC, Crill WE. (1993). Calcium currents in acutely isolated human neocortical neurons. Journal of neurophysiology. 69 [PubMed]
Sayer RJ, Schwindt PC, Crill WE. (1990). High- and low-threshold calcium currents in neurons acutely isolated from rat sensorimotor cortex. Neuroscience letters. 120 [PubMed]
Schaefer AT, Larkum ME, Sakmann B, Roth A. (2003). Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. Journal of neurophysiology. 89 [PubMed]
Schiller J, Major G, Koester HJ, Schiller Y. (2000). NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature. 404 [PubMed]
Schiller J, Schiller Y, Stuart G, Sakmann B. (1997). Calcium action potentials restricted to distal apical dendrites of rat neocortical pyramidal neurons. The Journal of physiology. 505 ( Pt 3) [PubMed]
Spruston N, Hausser M, Stuart G. (1999). Dendrites..
Spruston N, Schiller Y, Stuart G, Sakmann B. (1995). Activity-dependent action potential invasion and calcium influx into hippocampal CA1 dendrites. Science (New York, N.Y.). 268 [PubMed]
Stuart G, Häusser M. (1994). Initiation and spread of sodium action potentials in cerebellar Purkinje cells. Neuron. 13 [PubMed]
Stuart G, Spruston N. (1998). Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]
Stuart GJ, Dodt HU, Sakmann B. (1993). Patch-clamp recordings from the soma and dendrites of neurons in brain slices using infrared video microscopy. Pflugers Archiv : European journal of physiology. 423 [PubMed]
Stuart GJ, Sakmann B. (1994). Active propagation of somatic action potentials into neocortical pyramidal cell dendrites. Nature. 367 [PubMed]
Tsien RY. (1989). Fluorescent probes of cell signaling. Annual review of neuroscience. 12 [PubMed]
Vanier MC, Bower JM. (1999). A comparative survey of automated parameter-search methods for compartmental neural models. Journal of computational neuroscience. 7 [PubMed]
Williams SR, Stuart GJ. (2000). Site independence of EPSP time course is mediated by dendritic I(h) in neocortical pyramidal neurons. Journal of neurophysiology. 83 [PubMed]
Zhu JJ. (2000). Maturation of layer 5 neocortical pyramidal neurons: amplifying salient layer 1 and layer 4 inputs by Ca2+ action potentials in adult rat tuft dendrites. The Journal of physiology. 526 Pt 3 [PubMed]
Acker CD, Antic SD. (2009). Quantitative assessment of the distributions of membrane conductances involved in action potential backpropagation along basal dendrites. Journal of neurophysiology. 101 [PubMed]
Almog M, Korngreen A. (2014). A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]
Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]
Carnevale NT, Morse TM. (1996). Research reports that have used NEURON Web published citations at the NEURON website.
Edgerton JR, Hanson JE, Günay C, Jaeger D. (2010). Dendritic sodium channels regulate network integration in globus pallidus neurons: a modeling study. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]
Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S. (2014). A flexible, interactive software tool for fitting the parameters of neuronal models. Frontiers in neuroinformatics. 8 [PubMed]
Gold C, Henze DA, Koch C. (2007). Using extracellular action potential recordings to constrain compartmental models. Journal of computational neuroscience. 23 [PubMed]
Guo T et al. (2016). Electrical activity of ON and OFF retinal ganglion cells: a modelling study. Journal of neural engineering. 13 [PubMed]
Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]
Hendrickson EB, Edgerton JR, Jaeger D. (2011). The use of automated parameter searches to improve ion channel kinetics for neural modeling. Journal of computational neuroscience. 31 [PubMed]
Huys QJ, Ahrens MB, Paninski L. (2006). Efficient estimation of detailed single-neuron models. Journal of neurophysiology. 96 [PubMed]
Huys QJ, Paninski L. (2009). Smoothing of, and parameter estimation from, noisy biophysical recordings. PLoS computational biology. 5 [PubMed]
Jȩdrzejewski-Szmek Z, Abrahao KP, Jȩdrzejewska-Szmek J, Lovinger DM, Blackwell KT. (2018). Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Frontiers in neuroinformatics. 12 [PubMed]
Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]
Mensi S et al. (2012). Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms. Journal of neurophysiology. 107 [PubMed]
Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]
Mäki-Marttunen T, Mäki-Marttunen V. (2022). Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells PLoS computational biology. 18 [PubMed]
Nowotny T, Levi R, Selverston AI. (2008). Probing the dynamics of identified neurons with a data-driven modeling approach. PloS one. 3 [PubMed]
Rumbell TH et al. (2016). Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. Journal of computational neuroscience. 41 [PubMed]
Schaefer AT et al. (2007). Dendritic voltage-gated K+ conductance gradient in pyramidal neurones of neocortical layer 5B from rats. The Journal of physiology. 579 [PubMed]
Stiefel KM, Sejnowski TJ. (2007). Mapping function onto neuronal morphology. Journal of neurophysiology. 98 [PubMed]
Tobin AE, Calabrese RL. (2006). Endogenous and half-center bursting in morphologically inspired models of leech heart interneurons. Journal of neurophysiology. 96 [PubMed]
Tobin AE, Van Hooser SD, Calabrese RL. (2006). Creation and reduction of a morphologically detailed model of a leech heart interneuron. Journal of neurophysiology. 96 [PubMed]
Venkadesh S et al. (2018). Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. Frontiers in neuroinformatics. 12 [PubMed]
Wang K, Riera J, Enjieu-Kadji H, Kawashima R. (2013). The role of extracellular conductivity profiles in compartmental models for neurons: particulars for layer 5 pyramidal cells. Neural computation. 25 [PubMed]
Zang Y, Marder E. (2023). Neuronal morphology enhances robustness to perturbations of channel densities Proceedings of the National Academy of Sciences of the United States of America. 120 [PubMed]