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References and models cited by this paper
References and models that cite this paper

Acker CD, Antic SD. (2009). Quantitative assessment of the distributions of membrane conductances involved in action potential backpropagation along basal dendrites. J Neurophysiol 101 [PubMed]

Aghvami SS, Müller M, Araabi BN, Egger V. (2019). Coincidence Detection within the Excitable Rat Olfactory Bulb Granule Cell Spines. J Neurosci 39 [PubMed]

Ai H, Kai K, Kumaraswamy A, Ikeno H, Wachtler T. (2017). Interneurons in the Honeybee Primary Auditory Center Responding to Waggle Dance-Like Vibration Pulses. J Neurosci 37 [PubMed]

Almog M, Korngreen A. (2014). A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons J Neurosci 34(1) [PubMed]

Alturki A, Feng F, Nair A, Guntu V, Nair SS. (2016). Distinct current modules shape cellular dynamics in model neurons. Neuroscience 334 [PubMed]

Amatrudo JM, Weaver CM, Crimins JL, Hof PR, Rosene DL, Luebke JI. (2012). Influence of highly distinctive structural properties on the excitability of pyramidal neurons in monkey visual and prefrontal cortices. J Neurosci 32 [PubMed]

Anderson RW, Farokhniaee A, Gunalan K, Howell B, McIntyre CC. (2018). Action potential initiation, propagation, and cortical invasion in the hyperdirect pathway during subthalamic deep brain stimulation Brain Stimulation

Andreozzi E, Carannante I, D'Addio G, Cesarelli M, Balbi P. (2019). Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms Scientific Reports 9 [PubMed]

Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E. (2014). Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Front Cell Neurosci 8 [PubMed]

Arsiero M, Lüscher HR, Lundstrom BN, Giugliano M. (2007). The impact of input fluctuations on the frequency-current relationships of layer 5 pyramidal neurons in the rat medial prefrontal cortex. J Neurosci 27 [PubMed]

Ascoli GA, Gasparini S, Medinilla V, Migliore M. (2010). Local control of postinhibitory rebound spiking in CA1 pyramidal neuron dendrites. J Neurosci 30 [PubMed]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. J Neurosci Methods 210 [PubMed]

Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA. (2011). A computer model of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. J Comput Neurosci 31 [PubMed]

Balbi P, Martinoia S, Colombo R, Massobrio P. (2014). Modelling recurrent discharge in the spinal a-motoneuron: reappraisal of the F wave. Clin Neurophysiol 125 [PubMed]

Balbi P, Martinoia S, Massobrio P. (2015). Axon-somatic back-propagation in detailed models of spinal alpha motoneurons. Front Comput Neurosci 9 [PubMed]

Balbi P, Massobrio P, Hellgren Kotaleski J. (2017). A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms. PLoS Comput Biol 13 [PubMed]

Basak R, Narayanan R . (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS Comput Biol 14 [PubMed]

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW. (2012). Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS Comput Biol 8 [PubMed]

Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA. (2013). Modulation of hippocampal rhythms by subthreshold electric fields and network topology. J Comput Neurosci 34 [PubMed]

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. Elife 5 [PubMed]

Brette R, Goodman DF. (2011). Vectorized algorithms for spiking neural network simulation. Neural Comput 23 [PubMed]

Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, Lansner A, Rochel O, Vieville T, Muller E, Davison AP, El Boustani S, Destexhe A. (2007). Simulation of networks of spiking neurons: a review of tools and strategies. J Comput Neurosci 23 [PubMed]

Briant LJ, Stalbovskiy AO, Nolan MF, Champneys AR, Pickering AE. (2014). Increased intrinsic excitability of muscle vasoconstrictor preganglionic neurons may contribute to the elevated sympathetic activity in hypertensive rats. J Neurophysiol 112 [PubMed]

Calì C, Berger TK, Pignatelli M, Carleton A, Markram H, Giugliano M. (2008). Inferring connection proximity in networks of electrically coupled cells by subthreshold frequency response analysis. J Comput Neurosci 24 [PubMed]

Carnevale NT, Morse TM. (1996). Research reports that have used NEURON Web published citations at the NEURON website

Casale AE, Mccormick DA. (2011). Active action potential propagation but not initiation in thalamic interneuron dendrites. J Neurosci 31 [PubMed]

Cattani A, Solinas S, Canuto C. (2016). A Hybrid Model for the Computationally-Efficient Simulation of the Cerebellar Granular Layer. Front Comput Neurosci 10 [PubMed]

Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GM, Lytton WW. (2014). Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 26 [PubMed]

Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW. (2012). Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex. PLoS One 7 [PubMed]

Chambers JD, Bethwaite B, Diamond NT, Peachey T, Abramson D, Petrou S, Thomas EA. (2012). Parametric computation predicts a multiplicative interaction between synaptic strength parameters that control gamma oscillations. Front Comput Neurosci 6 [PubMed]

Chen W, De Schutter E. (2014). Python-based geometry preparation and simulation visualization toolkits for STEPS. Front Neuroinform 8 [PubMed]

Cisi RR, Kohn AF. (2008). Simulation system of spinal cord motor nuclei and associated nerves and muscles, in a Web-based architecture. J Comput Neurosci 25 [PubMed]

Connelly WM, Crunelli V, Errington AC. (2015). The Global Spike: Conserved Dendritic Properties Enable Unique Ca2+ Spike Generation in Low-Threshold Spiking Neurons. J Neurosci 35 [PubMed]

Coskren PJ, Luebke JI, Kabaso D, Wearne SL, Yadav A, Rumbell T, Hof PR, Weaver CM. (2015). Functional consequences of age-related morphologic changes to pyramidal neurons of the rhesus monkey prefrontal cortex. J Comput Neurosci 38 [PubMed]

Deitcher Y, Eyal G, Kanari L, Verhoog MB, Atenekeng Kahou GA, Mansvelder HD, de Kock CPJ, Segev I. (2017). Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex. Cereb Cortex 27 [PubMed]

Doron M, Chindemi G, Muller E, Markram H, Segev I. (2017). Timed Synaptic Inhibition Shapes NMDA Spikes, Influencing Local Dendritic Processing and Global I/O Properties of Cortical Neurons. Cell Rep 21 [PubMed]

Dover K, Marra C, Solinas S, Popovic M, Subramaniyam S, Zecevic D, D'Angelo E, Goldfarb M. (2016). FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon. Nat Commun 7 [PubMed]

Doyon N, Prescott SA, Castonguay A, Godin AG, Kröger H, de Koninck Y. (2011). Efficacy of synaptic inhibition depends on multiple, dynamically interacting mechanisms implicated in chloride homeostasis. PLoS Comput Biol 7 [PubMed]

Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW. (2015). Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Front Neurorobot 9 [PubMed]

Eguchi A, Neymotin SA, Stringer SM. (2014). Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity Front. Neural Circuits 8 [PubMed]

Einevoll GT, Ness TV, Miceli S. (2017). Impedance Spectrum in Cortical Tissue: Implications for Propagation of LFP Signals on the Microscopic Level Eneuro 4

Ermentrout GB, Terman DH. (2010). Mathematical Foundations of Neuroscience Interdisciplinary Applied Mathematics 35

Eyal G, Verhoog MB, Testa-Silva G, Deitcher Y, Benavides-Piccione R, DeFelipe J, de Kock CPJ, Mansvelder HD, Segev I. (2018). Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Front Cell Neurosci 12 [PubMed]

Eyal G, Verhoog MB, Testa-Silva G, Deitcher Y, Lodder JC, Benavides-Piccione R, Morales J, DeFelipe J, de Kock CP, Mansvelder HD, Segev I. (2016). Unique membrane properties and enhanced signal processing in human neocortical neurons. Elife 5 [PubMed]

Ferguson KA, Huh CY, Amilhon B, Manseau F, Williams S, Skinner FK. (2015). Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Front Syst Neurosci 9 [PubMed]

Ferrario A, Merrison-Hort R, Soffe SR, Borisyuk R. (2018). Structural and functional properties of a probabilistic model of neuronal connectivity in a simple locomotor network. Elife 7 [PubMed]

Forrest MD. (2015). Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster. BMC Neurosci 16 [PubMed]

Foutz TJ, Arlow RL, McIntyre CC. (2012). Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron. J Neurophysiol 107 [PubMed]

Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S. (2014). A flexible, interactive software tool for fitting the parameters of neuronal models. Front Neuroinform 8 [PubMed]

Gabbiani F, Cox SJ. (2010). Mathematics for Neuroscientists

Giugliano M, Gambazzi L, Ballerini L, Prato M, Campidelli S. (2012). Carbon nanotubes as electrical interfaces to neurons Nanotechnology for Biology and Medicine

Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Comput Biol 6 [PubMed]

Goodliffe JW, Song H, Rubakovic A, Chang W, Medalla M, Weaver CM, Luebke JI. (2018). Differential changes to D1 and D2 medium spiny neurons in the 12-month-old Q175+/- mouse model of Huntington's Disease. PLoS One 13 [PubMed]

Graham BP, Saudargiene A, Cobb S. (2014). Spine head calcium as a measure of summed postsynaptic activity for driving synaptic plasticity. Neural Comput 26 [PubMed]

Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G. (2014). 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. Front Neuroinform 8 [PubMed]

Grill WM, Behrend CE, Pelot NA. (2017). Modeling the response of small myelinated axons in a compound nerve to kilohertz frequency signals. J Neural Eng 14 [PubMed]

Grossman N, Simiaki V, Martinet C, Toumazou C, Schultz SR, Nikolic K. (2013). The spatial pattern of light determines the kinetics and modulates backpropagation of optogenetic action potentials. J Comput Neurosci 34 [PubMed]

Guet-McCreight A, Camiré O, Topolnik L, Skinner FK. (2016). Using a Semi-Automated Strategy to Develop Multi-Compartment Models That Predict Biophysical Properties of Interneuron-Specific 3 (IS3) Cells in Hippocampus. eNeuro 3 [PubMed]

Gulledge AT, Carnevale NT, Stuart GJ. (2012). Electrical advantages of dendritic spines. PLoS One 7 [PubMed]

Günay C, Sieling FH, Dharmar L, Lin WH, Wolfram V, Marley R, Baines RA, Prinz AA. (2015). Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS Comput Biol 11 [PubMed]

Hagen E, Fossum JC, Pettersen KH, Alonso JM, Swadlow HA, Einevoll GT. (2017). Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. J Neurosci 37 [PubMed]

Hahn PJ, McIntyre CC. (2010). Modeling shifts in the rate and pattern of subthalamopallidal network activity during deep brain stimulation. J Comput Neurosci 28 [PubMed]

Hallermann S, de Kock CP, Stuart GJ, Kole MH. (2012). State and location dependence of action potential metabolic cost in cortical pyramidal neurons. Nat Neurosci 15 [PubMed]

Halnes G, Mäki-Marttunen T, Keller D, Pettersen KH, Andreassen OA, Einevoll GT. (2016). Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. PLoS Comput Biol 12 [PubMed]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS Comput Biol 7 [PubMed]

Hay E, Schürmann F, Markram H, Segev I. (2013). Preserving axosomatic spiking features despite diverse dendritic morphology. J Neurophysiol 109 [PubMed]

Hay E, Segev I. (2015). Dendritic Excitability and Gain Control in Recurrent Cortical Microcircuits. Cereb Cortex 25 [PubMed]

Heitmann S, Breakspear M. (2017). Chapter 1 Handbook for the Brain Dynamics Toolbox: Version 2018a

Hernández OE, Zurek EE. (2013). Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON's programming language hoc. BMC Med Educ 13 [PubMed]

Hines ML, Davison AP, Muller E. (2009). NEURON and Python. Front Neuroinform 3 [PubMed]

Holmes WR, Huwe JA, Williams B, Rowe MH, Peterson EH. (2017). Models of utricular bouton afferents: role of afferent-hair cell connectivity in determining spike train regularity. J Neurophysiol 117 [PubMed]

Huang S, Hong S, De Schutter E. (2015). Non-linear leak currents affect mammalian neuron physiology. Front Cell Neurosci 9 [PubMed]

Hummos A, Franklin CC, Nair SS. (2014). Intrinsic mechanisms stabilize encoding and retrieval circuits differentially in a hippocampal network model. Hippocampus 24 [PubMed]

Hummos A, Nair SS. (2017). An integrative model of the intrinsic hippocampal theta rhythm. PLoS One 12 [PubMed]

Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW. (2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehabil Eng 20 [PubMed]

Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW. (2013). Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci 7 [PubMed]

Kim D, Paré D, Nair SS. (2013). Mechanisms contributing to the induction and storage of Pavlovian fear memories in the lateral amygdala. Learn Mem 20 [PubMed]

Kim H. (2017). Impact of the localization of dendritic calcium persistent inward current on the input-output properties of spinal motoneuron pool: a computational study. J Appl Physiol (1985) 123 [PubMed]

Kole MH, Ilschner SU, Kampa BM, Williams SR , Ruben PC, Stuart GJ. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nat Neurosci 11 [PubMed]

Le Franc Y, Le Masson G. (2010). Multiple firing patterns in deep dorsal horn neurons of the spinal cord: computational analysis of mechanisms and functional implications. J Neurophysiol 104 [PubMed]

Lee SH, Marchionni I, Bezaire M, Varga C, Danielson N, Lovett-Barron M, Losonczy A, Soltesz I. (2014). Parvalbumin-positive basket cells differentiate among hippocampal pyramidal cells. Neuron 82 [PubMed]

Li G, Cleland TA. (2013). A two-layer biophysical model of cholinergic neuromodulation in olfactory bulb. J Neurosci 33 [PubMed]

Li G, Cleland TA. (2017). A coupled-oscillator model of olfactory bulb gamma oscillations. PLoS Comput Biol 13 [PubMed]

Linaro D, Storace M, Giugliano M. (2011). Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation. PLoS Comput Biol 7 [PubMed]

Lonardoni D, Amin H, Di Marco S, Maccione A, Berdondini L, Nieus T. (2017). Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks. PLoS Comput Biol 13 [PubMed]

Lytton WW, Neymotin SA, Hines ML. (2008). The virtual slice setup. J Neurosci Methods 171 [PubMed]

Lytton WW, Neymotin SA, Wester JC, Contreras D. (2011). Neocortical simulation for epilepsy surgery guidance: Localization and intervention Computational Surgery and Dual Training

Lytton WW, Orman R, Stewart M. (2008). Broadening of activity with flow across neural structures. Perception 37 [PubMed]

Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schürmann F, Hines ML. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput 28 [PubMed]

Major G, Polsky A, Denk W, Schiller J, Tank DW. (2008). Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. J Neurophysiol 99 [PubMed]

Mandge D, Manchanda R. (2018). A biophysically detailed computational model of urinary bladder small DRG neuron soma. PLoS Comput Biol 14 [PubMed]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Front Comput Neurosci 4 [PubMed]

Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Segev I, Schürmann F. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell 163 [PubMed]

Mateos-Aparicio P, Murphy R, Storm JF . (2014). Complementary functions of SK and Kv7/M potassium channels in excitability control and synaptic integration in rat hippocampal dentate granule cells. J Physiol 592 [PubMed]

Mattioni M, Cohen U, Le Novère N. (2012). Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. Front Neuroinform 6 [PubMed]

Mattioni M, Le Novère N. (2013). Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum. PLoS One 8 [PubMed]

McDougal RA, Hines ML, Lytton WW. (2013). Reaction-diffusion in the NEURON simulator. Front Neuroinform 7 [PubMed]

Medan V, Mäki-Marttunen T, Sztarker J, Preuss T. (2018). Differential processing in modality-specific Mauthner cell dendrites. J Physiol 596 [PubMed]

Michalikova M, Remme MW, Kempter R. (2017). Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS Comput Biol 13 [PubMed]

Morgan RJ, Santhakumar V, Soltesz I. (2007). Modeling the dentate gyrus. Prog Brain Res 163 [PubMed]

Moriyoshi Y, Takeuchi T. (1991). [Exocrine pancreatic function tests]. Rinsho Byori Suppl 89 [PubMed]

Mukunda CL, Narayanan R . (2017). Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. J Physiol 595 [PubMed]

Munro E, Kopell N. (2012). Subthreshold somatic voltage in neocortical pyramidal cells can control whether spikes propagate from the axonal plexus to axon terminals: a model study. J Neurophysiol 107 [PubMed]

Narayanan R , Johnston D. (2007). Long-term potentiation in rat hippocampal neurons is accompanied by spatially widespread changes in intrinsic oscillatory dynamics and excitability. Neuron 56 [PubMed]

Narayanan R , Johnston D. (2008). The h channel mediates location dependence and plasticity of intrinsic phase response in rat hippocampal neurons. J Neurosci 28 [PubMed]

Narayanan R , Johnston D. (2010). The h current is a candidate mechanism for regulating the sliding modification threshold in a BCM-like synaptic learning rule. J Neurophysiol 104 [PubMed]

Ness TV, Remme MW, Einevoll GT. (2016). Active subthreshold dendritic conductances shape the local field potential. J Physiol 594 [PubMed]

Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW. (2013). Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural Comput 25 [PubMed]

Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. (2016). Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 7 [PubMed]

Neymotin SA, Hilscher MM, Moulin TC, Skolnick Y, Lazarewicz MT, Lytton WW. (2013). Ih tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PLoS One 8 [PubMed]

Neymotin SA, Jacobs KM, Fenton AA, Lytton WW. (2011). Synaptic information transfer in computer models of neocortical columns. J Comput Neurosci 30 [PubMed]

Neymotin SA, Lazarewicz MT, Sherif M, Contreras D, Finkel LH, Lytton WW. (2011). Ketamine disrupts ? modulation of ? in a computer model of hippocampus. J Neurosci 31 [PubMed]

Neymotin SA, Lee H, Fenton AA, Lytton WW. (2010). Interictal EEG discoordination in a rat seizure model. J Clin Neurophysiol 27 [PubMed]

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW. (2011). Emergence of physiological oscillation frequencies in a computer model of neocortex. Front Comput Neurosci 5 [PubMed]

Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW. (2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience 316 [PubMed]

Neymotin SA, McDougal RA, Sherif MA, Fall CP, Hines ML, Lytton WW. (2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Comput 27 [PubMed]

Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW. (2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. J Neurophysiol 117 [PubMed]

Nichols EJ, Hutt A. (2015). Neural field simulator: two-dimensional spatio-temporal dynamics involving finite transmission speed. Front Neuroinform 9 [PubMed]

Oertner TG, Tian L, Grunditz A, Holbro N, Zuo Y. (2008). Supplementary data to Spine Neck Plasticity Controls Postsynaptic Calcium Signals through Electrical Compartmentalization J Neurosci 28(50)

Oltedal L, Mørkve SH, Veruki ML, Hartveit E. (2007). Patch-clamp investigations and compartmental modeling of rod bipolar axon terminals in an in vitro thin-slice preparation of the mammalian retina. J Neurophysiol 97 [PubMed]

Omurtag A, Lytton WW. (2010). Spectral method and high-order finite differences for the nonlinear cable equation. Neural Comput 22 [PubMed]

Ona-Jodar T, Gerkau NJ, Sara Aghvami S, Rose CR, Egger V. (2017). Two-Photon Na+ Imaging Reports Somatically Evoked Action Potentials in Rat Olfactory Bulb Mitral and Granule Cell Neurites. Front Cell Neurosci 11 [PubMed]

Parekh R, Ascoli GA. (2013). Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron 77 [PubMed]

Pashut T, Wolfus S, Friedman A, Lavidor M, Bar-Gad I, Yeshurun Y, Korngreen A. (2011). Mechanisms of magnetic stimulation of central nervous system neurons. PLoS Comput Biol 7 [PubMed]

Podlaski WF, Seeholzer A, Groschner LN, Miesenböck G, Ranjan R, Vogels TP. (2017). Mapping the function of neuronal ion channels in model and experiment. Elife 6 [PubMed]

Popovic MA, Gao X, Carnevale NT, Zecevic D. (2014). Cortical dendritic spine heads are not electrically isolated by the spine neck from membrane potential signals in parent dendrites. Cereb Cortex 24 [PubMed]

Publio R, Oliveira RF, Roque AC. (2009). A computational study on the role of gap junctions and rod Ih conductance in the enhancement of the dynamic range of the retina. PLoS One 4 [PubMed]

Ray S, Bhalla US. (2008). PyMOOSE: Interoperable Scripting in Python for MOOSE. Front Neuroinform 2 [PubMed]

Reetz O, Stadler K, Strauss U. (2014). Protein kinase C activation mediates interferon-ß-induced neuronal excitability changes in neocortical pyramidal neurons. J Neuroinflammation 11 [PubMed]

Reilly JP. (2016). Survey of numerical electrostimulation models. Phys Med Biol 61 [PubMed]

Rowan MS, Neymotin SA. (2013). Synaptic Scaling Balances Learning in a Spiking Model of Neocortex Adaptive and Natural Computing Algorithms 7824

Rowan MS, Neymotin SA, Lytton WW. (2014). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci 8 [PubMed]

Royeck M, Horstmann MT, Remy S, Reitze M, Yaari Y, Beck H. (2008). Role of axonal NaV1.6 sodium channels in action potential initiation of CA1 pyramidal neurons. J Neurophysiol 100 [PubMed]

Rubin DB, Cleland TA. (2006). Dynamical mechanisms of odor processing in olfactory bulb mitral cells. J Neurophysiol 96 [PubMed]

Rudnicki M, Hemmert W. (2017). High Entrainment Constrains Synaptic Depression Levels of an In vivo Globular Bushy Cell Model. Front Comput Neurosci 11 [PubMed]

Rumbell T, Kozloski J. (2019). Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology 15

Rumbell TH, Draguljic D, Yadav A, Hof PR, Luebke JI, Weaver CM. (2016). Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. J Comput Neurosci 41 [PubMed]

Rössert C, Moore LE, Straka H, Glasauer S. (2011). Cellular and network contributions to vestibular signal processing: impact of ion conductances, synaptic inhibition, and noise. J Neurosci 31 [PubMed]

Sailamul P, Jang J, Paik SB. (2017). Synaptic convergence regulates synchronization-dependent spike transfer in feedforward neural networks. J Comput Neurosci 43 [PubMed]

Sanjay M, Neymotin SA, Krothapalli SB. (2015). Impaired dendritic inhibition leads to epileptic activity in a computer model of CA3. Hippocampus 25 [PubMed]

Schmidt-Hieber C, Bischofberger J. (2010). Fast sodium channel gating supports localized and efficient axonal action potential initiation. J Neurosci 30 [PubMed]

Schmidt-Hieber C, Häusser M. (2013). Cellular mechanisms of spatial navigation in the medial entorhinal cortex. Nat Neurosci 16 [PubMed]

Schmidt-Hieber C, Jonas P, Bischofberger J. (2007). Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells. J Neurosci 27 [PubMed]

Schmidt-Hieber C, Toleikyte G, Aitchison L, Roth A, Clark BA, Branco T, Häusser M. (2017). Active dendritic integration as a mechanism for robust and precise grid cell firing. Nat Neurosci 20 [PubMed]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife

Sekulic V, Chen TC, Lawrence JJ, Skinner FK. (2015). Dendritic distributions of I h channels in experimentally-derived multi-compartment models of oriens-lacunosum/moleculare (O-LM) hippocampal interneurons. Front Synaptic Neurosci 7 [PubMed]

Singh C, Levy WB. (2017). A consensus layer V pyramidal neuron can sustain interpulse-interval coding. PLoS One 12 [PubMed]

Solinas SMG, Edelmann E, Leßmann V, Migliore M. (2019). A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP. PLoS Comput Biol 15 [PubMed]

Soltesz I, Armstrong C, Raikov I, Bezaire M, Burk K. (2016). SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON bioRxiv

Steephen JE, Manchanda R. (2009). Differences in biophysical properties of nucleus accumbens medium spiny neurons emerging from inactivation of inward rectifying potassium currents. J Comput Neurosci 27 [PubMed]

Stegeman DF, Kuck A, van Asseldonk EHF. (2017). Modeling trans-spinal direct current stimulation for the modulation of the lumbar spinal motor pathways J Neural Eng. 14(5) [PubMed]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press

Stiefel KM, Englitz B, Sejnowski TJ. (2013). Origin of intrinsic irregular firing in cortical interneurons. Proc Natl Acad Sci U S A 110 [PubMed]

Szoboszlay M, Lorincz A, Lanore F, Vervaeke K, Silver RA, Nusser Z. (2016). Functional Properties of Dendritic Gap Junctions in Cerebellar Golgi Cells. Neuron 90 [PubMed]

Tanaka T, Nakamura KC. (2019). Focal inputs are a potential origin of local field potential (LFP) in the brain regions without laminar structure. PLoS One 14 [PubMed]

Thomas EA, Petrou S. (2013). Network-specific mechanisms may explain the paradoxical effects of carbamazepine and phenytoin. Epilepsia 54 [PubMed]

Tikidji-Hamburyan RA, El-Ghazawi TA, Narayana V, Bozkus Z. (2017). Software for Brain Network Simulations: A Comparative Study Front. Neuroinform.

Uhlrich DJ, Neymotin S, Manning KA. (2008). Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems 151

Versace M, Ames H, Léveillé J, Fortenberry B, Gorchetchnikov A. (2008). KInNeSS: a modular framework for computational neuroscience. Neuroinformatics 6 [PubMed]

Vervaeke K, Lorincz A, Gleeson P, Farinella M, Nusser Z, Silver RA. (2010). Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input. Neuron 67 [PubMed]

Wang XD, Hao J, Poo MM , Zhang XH. (2006). How does a neuron perform subtraction? - Arithmetic rules of synaptic integration of excitation and inhibition Advances in Neural Networks-ISNN 2006 3971

Welday AC, Shlifer IG, Bloom ML, Zhang K, Blair HT. (2011). Cosine directional tuning of theta cell burst frequencies: evidence for spatial coding by oscillatory interference. J Neurosci 31 [PubMed]

Wimmer VC, Reid CA, Mitchell S, Richards KL, Scaf BB, Leaw BT, Hill EL, Royeck M, Horstmann MT, Cromer BA, Davies PJ, Xu R, Lerche H, Berkovic SF, Beck H, Petrou S. (2010). Axon initial segment dysfunction in a mouse model of genetic epilepsy with febrile seizures plus. J Clin Invest 120 [PubMed]

Yamazaki T, Ikeno H, Okumura Y, Satoh S, Kamiyama Y, Hirata Y, Inagaki K, Ishihara A, Kannon T, Usui S. (2011). Simulation Platform: a cloud-based online simulation environment. Neural Netw 24 [PubMed]

Young RG, Castelfranco AM, Hartline DK. (2013). The "Lillie transition": models of the onset of saltatory conduction in myelinating axons. J Comput Neurosci 34 [PubMed]

Yu N, Canavier CC. (2015). A Mathematical Model of a Midbrain Dopamine Neuron Identifies Two Slow Variables Likely Responsible for Bursts Evoked by SK Channel Antagonists and Terminated by Depolarization Block. J Math Neurosci 5 [PubMed]

Zeldenrust F, Chameau P, Wadman WJ. (2018). Spike and burst coding in thalamocortical relay cells. PLoS Comput Biol 14 [PubMed]

Zhang X, Santaniello S. (2019). Role of cerebellar GABAergic dysfunctions in the origins of essential tremor Proceedings of the National Academy of Sciences

van Elburg RA, Van Ooyen A. (2009). Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire models. Neural Comput 21 [PubMed]

van der Velden L, van Hooft JA, Chameau P. (2012). Altered dendritic complexity affects firing properties of cortical layer 2/3 pyramidal neurons in mice lacking the 5-HT3A receptor. J Neurophysiol 108 [PubMed]