ModelDB: Models that contain Trentool

Simulation Environment: Trentool

Note: this list includes both models hosted here at ModelDB and models where have metadata and link to the sourcecode somewhere else. These may also be viewed separately; see the browse by simulator page.

A neural mass model for critical assessment of brain connectivity (Ursino et al 2020)
Neural Mass Model for relationship between Brain Rhythms + Functional Connectivity (Ricci et al '21)

https://trentool.github.io/TRENTOOL3/
TRENTOOL (TRansfer ENtropy TOOLbox) is an open source GPLv3 Matlab® toolbox for the analysis of information transfer in time series data and is distributed under the GNU public license version 3 (or later). TRENTOOL provides user friendly routines for the estimation and statistical testing of transfer entropy in time series data.

Top authors for Trentool:

Ursino M (2)
Ricci G (2)
Magosso E (2)

Top concepts studied with Trentool:

Brain Rhythms (2)
Connectivity matrix (2)
Delay (2)

Top neurons studied with Trentool:

Neocortex L5/6 pyramidal GLU cell (2)
Neocortex layer 5 interneuron (2)

Top references cited by these models:

Cona F, Lacanna M, Ursino M. (2014). A thalamo-cortical neural mass model for the simulation of brain rhythms during sleep. Journal of computational neuroscience. 37 (2)
Cona F, Zavaglia M, Massimini M, Rosanova M, Ursino M. (2011). A neural mass model of interconnected regions simulates rhythm propagation observed via TMS-EEG. NeuroImage. 57 (2)
David O, Cosmelli D, Friston KJ. (2004). Evaluation of different measures of functional connectivity using a neural mass model. NeuroImage. 21 (2)
Garofalo M, Nieus T, Massobrio P, Martinoia S. (2009). Evaluation of the performance of information theory-based methods and cross-correlation to estimate the functional connectivity in cortical networks. PloS one. 4 (2)
Schreiber T. (2000). Measuring information transfer Physical review letters. 85 (2)