Model Concept: Active Dendrites

The model investigates the consequences of having active membrane properties in the dendrites.

  1. 3D model of the olfactory bulb (Migliore et al. 2014)
  2. 3D olfactory bulb: operators (Migliore et al, 2015)
  3. A model of slow motor unit (Kim, 2017)
  4. A multi-compartment model for interneurons in the dLGN (Halnes et al. 2011)
  5. A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012)
  6. A simple integrative electrophysiological model of bursting GnRH neurons (Csercsik et al. 2011)
  7. A simplified cerebellar Purkinje neuron (the PPR model) (Brown et al. 2011)
  8. Acetylcholine Boosts Dendritic NMDA Spikes in a CA3 Pyramidal Neuron Model (Humphries et al., 2021)
  9. Action potential initiation in the olfactory mitral cell (Shen et al 1999)
  10. Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010)
  11. Action potential-evoked Na+ influx similar in axon and soma (Fleidervish et al. 2010) (Python)
  12. Active dendrites and spike propagation in a hippocampal interneuron (Saraga et al 2003)
  13. Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018)
  14. Active dendritic integration in robust and precise grid cell firing (Schmidt-Hieber et al 2017)
  15. Alcohol action in a detailed Purkinje neuron model and an efficient simplified model (Forrest 2015)
  16. Amyloid beta (IA block) effects on a model CA1 pyramidal cell (Morse et al. 2010)
  17. Apical Length Governs Computational Diversity of Layer 5 Pyramidal Neurons (Galloni et al 2020)
  18. BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010)
  19. BDNF morphological contributions to AP enhancement (Galati et al. 2016)
  20. CA1 oriens alveus interneurons: signaling properties (Minneci et al. 2007)
  21. CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)
  22. CA1 pyramidal neuron (Migliore et al 1999)
  23. CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003)
  24. CA1 pyramidal neuron: action potential backpropagation (Gasparini & Migliore 2015)
  25. CA1 pyramidal neuron: calculation of MRI signals (Cassara et al. 2008)
  26. CA1 pyramidal neuron: conditional boosting of dendritic APs (Watanabe et al 2002)
  27. CA1 pyramidal neuron: dendritic Ca2+ inhibition (Muellner et al. 2015)
  28. CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)
  29. CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004)
  30. CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004)
  31. CA1 pyramidal neuron: effects of Lamotrigine on dendritic excitability (Poolos et al 2002)
  32. CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013)
  33. CA1 pyramidal neuron: integration of subthreshold inputs from PP and SC (Migliore 2003)
  34. CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018)
  35. CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010)
  36. CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
  37. CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005)
  38. CA1 Pyramidal Neuron: slow Na+ inactivation (Migliore 1996)
  39. CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008)
  40. CA1 pyramidal neurons: effect of external electric field from power lines (Cavarretta et al. 2014)
  41. CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009)
  42. CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012)
  43. CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011)
  44. CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011)
  45. CA3 hippocampal pyramidal neuron with voltage-clamp intrinsic conductance data (Traub et al 1991)
  46. CA3 pyramidal cell: rhythmogenesis in a reduced Traub model (Pinsky, Rinzel 1994)
  47. CA3 pyramidal neuron (Lazarewicz et al 2002)
  48. CA3 pyramidal neuron (Safiulina et al. 2010)
  49. CA3 pyramidal neuron: firing properties (Hemond et al. 2008)
  50. Calcium dynamics depend on dendritic diameters (Anwar et al. 2014)
  51. Calcium spikes in basal dendrites (Kampa and Stuart 2006)
  52. Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
  53. Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
  54. Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010)
  55. Cerebellar purkinje cell (De Schutter and Bower 1994)
  56. Cerebellar purkinje cell: K and Ca channels regulate APs (Miyasho et al 2001)
  57. Cerebellum Purkinje cell: dendritic ion channels activated by climbing fibre (Ait Ouares et al 2019)
  58. Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007)
  59. Coincident signals in Olfactory Bulb Granule Cell spines (Aghvami et al 2019)
  60. Comparison of full and reduced globus pallidus models (Hendrickson 2010)
  61. Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017)
  62. Conditions of dominant effectiveness of distal dendrites (Korogod, Kulagina 1998)
  63. Contrast invariance by LGN synaptic depression (Banitt et al. 2007)
  64. Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017)
  65. Cortical network model of posttraumatic epileptogenesis (Bush et al 1999)
  66. Dendritic L-type Ca currents in motoneurons (Carlin et al 2000)
  67. Dendritic Na inactivation drives a decrease in ISI (Fernandez et al 2005)
  68. Dendritic Na+ spike initiation and backpropagation of APs in active dendrites (Nevian et al. 2007)
  69. Dendritic properties control energy efficiency of APs in cortical pyramidal cells (Yi et al 2017)
  70. Dendritic signals command firing dynamics in a Cerebellar Purkinje Cell model (Genet et al. 2010)
  71. Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo (Smith et al 2013)
  72. Dendritica (Vetter et al 2001)
  73. Dichotomy of action-potential backpropagation in CA1 pyramidal neuron dendrites (Golding et al 2001)
  74. Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015)
  75. Distinct integration properties of noisy inputs in active dendritic subunits (Poleg-Polsky 2019)
  76. Double cable myelinated axon (Layer 5 pyramidal neuron; Cohen et al 2020)
  77. Dynamical assessment of ion channels during in vivo-like states (Guet-McCreight & Skinner 2020)
  78. Effects of neural morphology on global and focal NMDA-spikes (Poleg-Polsky 2015)
  79. ELL Medium Ganglion Cell (Mormyrid fish) (Muller et al, 2023)
  80. Estimating the effects of slicing on the electrophysiological properties of spinal motoneurons under normal and disease conditions (Mousa and Elbasiouny 2021)
  81. Excitability of PFC Basal Dendrites (Acker and Antic 2009)
  82. Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012)
  83. Fast Spiking Basket cells (Tzilivaki et al 2019)
  84. Four-pathway phenomenological synaptic plasticity model (Ebner et al. 2019)
  85. Functional impact of dendritic branch point morphology (Ferrante et al., 2013)
  86. Functional structure of mitral cell dendritic tuft (Djurisic et al. 2008)
  87. Geometry-induced features of current transfer in neuronal dendrites (Korogod, Kulagina 1998)
  88. Globus pallidus multi-compartmental model neuron with realistic morphology (Gunay et al. 2008)
  89. Globus pallidus neuron models with differing dendritic Na channel expression (Edgerton et al., 2010)
  90. Glutamate mediated dendritic and somatic plateau potentials in cortical L5 pyr cells (Gao et al '20)
  91. GP Neuron, somatic and dendritic phase response curves (Schultheiss et al. 2011)
  92. Granule Cells of the Olfactory Bulb (Simoes_De_Souza et al. 2014)
  93. Heterosynaptic Spike-Timing-Dependent Plasticity (Hiratani & Fukai 2017)
  94. Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006)
  95. Hippocampal CA1 microcircuit model including somatic and dendritic inhibition
  96. Hotspots of dendritic spine turnover facilitates new spines and NN sparsity (Frank et al 2018)
  97. Human Cortical L5 Pyramidal Cell (Rich et al. 2021)
  98. Impact of dendritic atrophy on intrinsic and synaptic excitability (Narayanan & Chattarji, 2010)
  99. Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010)
  100. Impact on backpropagation of the spatial heterogeneity of sodium channel kinetics in the axon initial segment (Barlow et al., in press)
  101. Influence of dendritic structure on neocortical neuron firing patterns (Mainen and Sejnowski 1996)
  102. Interneuron Specific 3 Interneuron Model (Guet-McCreight et al, 2016)
  103. Kinetics and functional consequences of BK Channels activation by N-type Ca2+ channels in the dendrite of mouse neocortical layer-5 pyramidal neurons (Blömer et al., 2024)
  104. KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013)
  105. L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013)
  106. L5 PFC pyramidal neurons (Papoutsi et al. 2017)
  107. L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011)
  108. Large scale model of the olfactory bulb (Yu et al., 2013)
  109. Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
  110. Layer 5 Pyramidal Neuron (Shai et al., 2015)
  111. LGMD - ON excitation to dendritic field C
  112. LGMD impedance (Dewell & Gabbiani 2019)
  113. LGMD with 3D morphology and active dendrites (Dewell & Gabbiani 2018)
  114. Library of biophysically detailed striatal projection neurons (Lindroos and Hellgren Kotaleski 2020)
  115. Linear vs non-linear integration in CA1 oblique dendrites (Gómez González et al. 2011)
  116. Locational influence of dendritic PIC on input-output properties of spinal motoneurons (Kim 2017)
  117. Mechanisms of fast rhythmic bursting in a layer 2/3 cortical neuron (Traub et al 2003)
  118. Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014)
  119. Membrane potential changes in dendritic spines during APs and synaptic input (Palmer & Stuart 2009)
  120. Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015)
  121. Model of memory linking through memory allocation (Kastellakis et al. 2016)
  122. Morphological determinants of action potential dynamics in substantia nigra (Moubarak et al 2022)
  123. Motoneuron model of self-sustained firing after spinal cord injury (Kurian et al. 2011)
  124. Multi-comp. CA1 O-LM interneuron model with varying dendritic Ih distributions (Sekulic et al 2015)
  125. Multicompartmental cerebellar granule cell model (Diwakar et al. 2009)
  126. Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008)
  127. Na+ Signals in olfactory bulb neurons (granule cell model) (Ona-Jodar et al. 2017)
  128. NAcc medium spiny neuron: effects of cannabinoid withdrawal (Spiga et al. 2010)
  129. Nigral dopaminergic neurons: effects of ethanol on Ih (Migliore et al. 2008)
  130. Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012)
  131. Olfactory bulb granule cell: effects of odor deprivation (Saghatelyan et al 2005)
  132. Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007)
  133. Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008)
  134. Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012)
  135. Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005)
  136. Olfactory Bulb mitral-granule network generates beta oscillations (Osinski & Kay 2016)
  137. Olfactory Computations in Mitral-Granule cell circuits (Migliore & McTavish 2013)
  138. Opposing roles for Na+/Ca2+ exchange and Ca2+-activated K+ currents during STDP (O`Halloran 2020)
  139. Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
  140. Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011)
  141. Pyramidal neuron, fast, regular, and irregular spiking interneurons (Konstantoudaki et al 2014)
  142. Rat LGN Thalamocortical Neuron (Connelly et al 2015, 2016)
  143. Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21)
  144. Roles of I(A) and morphology in AP prop. in CA1 pyramidal cell dendrites (Acker and White 2007)
  145. Salamander retinal ganglian cells: morphology influences firing (Sheasby, Fohlmeister 1999)
  146. Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016)
  147. Self-influencing synaptic plasticity (Tamosiunaite et al. 2007)
  148. Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020)
  149. Shaping NMDA spikes by timed synaptic inhibition on L5PC (Doron et al. 2017)
  150. Signal integration in a CA1 pyramidal cell (Graham 2001)
  151. Spectral method and high-order finite differences for nonlinear cable (Omurtag and Lytton 2010)
  152. Spike Initiation in Neocortical Pyramidal Neurons (Mainen et al 1995)
  153. Spike propagation in dendrites with stochastic ion channels (Diba et al. 2006)
  154. Spike-timing dependent inhibitory plasticity for gating bAPs (Wilmes et al 2017)
  155. Spinal Motor Neuron (Dodge, Cooley 1973)
  156. Spine fusion and branching affects synaptic response (Rusakov et al 1996, 1997)
  157. STDP depends on dendritic synapse location (Letzkus et al. 2006)
  158. Stochastic 3D model of neonatal rat spinal motoneuron (Ostroumov 2007)
  159. Stochastic calcium mechanisms cause dendritic calcium spike variability (Anwar et al. 2013)
  160. Stochastic Ih and Na-channels in pyramidal neuron dendrites (Kole et al 2006)
  161. Striatum D1 Striosome and Matrix Upstates (Prager et al., 2020)
  162. Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009)
  163. Thalamic reticular neurons: the role of Ca currents (Destexhe et al 1996)
  164. The subcellular distribution of T-type Ca2+ channels in LGN interneurons (Allken et al. 2014)
  165. Theory of sequence memory in neocortex (Hawkins & Ahmad 2016)
  166. Theta phase precession in a model CA3 place cell (Baker and Olds 2007)
  167. Transfer properties of Neuronal Dendrites (Korogod et al 1998)
  168. Using Strahler's analysis to reduce realistic models (Marasco et al, 2013)
  169. Visual Cortex Neurons: Dendritic computations (Archie, Mel 2000)
  170. Voltage attenuation in CA1 pyramidal neuron dendrites (Golding et al 2005)
  171. Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)
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