A generic MAPK cascade model for random parameter sampling analysis (Mai and Liu 2013)


Mai Z, Liu H. (2013). Random parameter sampling of a generic three-tier MAPK cascade model reveals major factors affecting its versatile dynamics PloS one. 8 [PubMed]

See more from authors: Mai Z · Liu H

References and models cited by this paper

Alessi DR et al. (1994). Identification of the sites in MAP kinase kinase-1 phosphorylated by p74raf-1. The EMBO journal. 13 [PubMed]

Beal MJ, Falciani F, Ghahramani Z, Rangel C, Wild DL. (2005). A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics (Oxford, England). 21 [PubMed]

Campagne F et al. (2004). Quantitative information management for the biochemical computation of cellular networks. Science's STKE : signal transduction knowledge environment. 2004 [PubMed]

Falschlehner C, Emmerich CH, Gerlach B, Walczak H. (2007). TRAIL signalling: decisions between life and death. The international journal of biochemistry & cell biology. 39 [PubMed]

Ferrell JE. (2002). Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Current opinion in cell biology. 14 [PubMed]

Ferrell JE, Machleder EM. (1998). The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science (New York, N.Y.). 280 [PubMed]

Ferrell JE, Xiong W. (2001). Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. Chaos (Woodbury, N.Y.). 11 [PubMed]

HarshaRani GV, Vayttaden SJ, Bhalla US. (2005). Electronic data sources for kinetic models of cell signaling. Journal of biochemistry. 137 [PubMed]

Hilioti Z et al. (2008). Oscillatory phosphorylation of yeast Fus3 MAP kinase controls periodic gene expression and morphogenesis. Current biology : CB. 18 [PubMed]

Huang CY, Ferrell JE. (1996). Ultrasensitivity in the mitogen-activated protein kinase cascade. Proceedings of the National Academy of Sciences of the United States of America. 93 [PubMed]

Huang S, Ingber DE. (2000). Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks. Experimental cell research. 261 [PubMed]

Hucka M et al. (2003). The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics (Oxford, England). 19 [PubMed]

Keshet Y, Seger R. (2010). The MAP kinase signaling cascades: a system of hundreds of components regulates a diverse array of physiological functions. Methods in molecular biology (Clifton, N.J.). 661 [PubMed]

Kholodenko BN. (2000). Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. European journal of biochemistry. 267 [PubMed]

Kuida K, Boucher DM. (2004). Functions of MAP kinases: insights from gene-targeting studies. Journal of biochemistry. 135 [PubMed]

Kurata H, Tanaka T, Ohnishi F. (2007). Mathematical identification of critical reactions in the interlocked feedback model. PloS one. 2 [PubMed]

Le Novère N et al. (2006). BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic acids research. 34 [PubMed]

Levchenko A, Bruck J, Sternberg PW. (2000). Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. Proceedings of the National Academy of Sciences of the United States of America. 97 [PubMed]

Lue H et al. (2006). Rapid and transient activation of the ERK MAPK signalling pathway by macrophage migration inhibitory factor (MIF) and dependence on JAB1/CSN5 and Src kinase activity. Cellular signalling. 18 [PubMed]

Markevich NI, Hoek JB, Kholodenko BN. (2004). Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. The Journal of cell biology. 164 [PubMed]

Nakakuki T et al. (2008). Topological analysis of MAPK cascade for kinetic ErbB signaling. PloS one. 3 [PubMed]

Nikolaev EV, Atlas JC, Shuler ML. (2007). Sensitivity and control analysis of periodically forced reaction networks using the Green's function method. Journal of theoretical biology. 247 [PubMed]

Qiao L, Nachbar RB, Kevrekidis IG, Shvartsman SY. (2007). Bistability and oscillations in the Huang-Ferrell model of MAPK signaling. PLoS computational biology. 3 [PubMed]

Santos SD, Verveer PJ, Bastiaens PI. (2007). Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Nature cell biology. 9 [PubMed]

Sasagawa S, Ozaki Y, Fujita K, Kuroda S. (2005). Prediction and validation of the distinct dynamics of transient and sustained ERK activation. Nature cell biology. 7 [PubMed]

Schoeberl B, Eichler-Jonsson C, Gilles ED, Müller G. (2002). Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nature biotechnology. 20 [PubMed]

Seger R, Krebs EG. (1995). The MAPK signaling cascade. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 9 [PubMed]

Shaul YD, Seger R. (2007). The MEK/ERK cascade: from signaling specificity to diverse functions. Biochimica et biophysica acta. 1773 [PubMed]

Sivakumaran S, Hariharaputran S, Mishra J, Bhalla US. (2003). The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks. Bioinformatics (Oxford, England). 19 [PubMed]

Torii S, Nakayama K, Yamamoto T, Nishida E. (2004). Regulatory mechanisms and function of ERK MAP kinases. Journal of biochemistry. 136 [PubMed]

Wellbrock C, Karasarides M, Marais R. (2004). The RAF proteins take centre stage. Nature reviews. Molecular cell biology. 5 [PubMed]

Yoon J, Deisboeck TS. (2009). Investigating differential dynamics of the MAPK signaling cascade using a multi-parametric global sensitivity analysis. PloS one. 4 [PubMed]

Yoon S, Seger R. (2006). The extracellular signal-regulated kinase: multiple substrates regulate diverse cellular functions. Growth factors (Chur, Switzerland). 24 [PubMed]

van Riel NA. (2006). Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. Briefings in bioinformatics. 7 [PubMed]

References and models that cite this paper
This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.