ModFossa: a library for modeling ion channels using Python (Ferneyhough et al 2016)


Ferneyhough GB, Thibealut CM, Dascalu SM, Harris FC. (2016). ModFossa: A library for modeling ion channels using Python. Journal of bioinformatics and computational biology. 14 [PubMed]

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References and models cited by this paper

Acton SF. (1970). Numerical Methods That Work.

Angermann JE, Sanguinetti AR, Kenyon JL, Leblanc N, Greenwood IA. (2006). Mechanism of the inhibition of Ca2+-activated Cl- currents by phosphorylation in pulmonary arterial smooth muscle cells. The Journal of general physiology. 128 [PubMed]

Capener CE, Kim HJ, Arinaminpathy Y, Sansom MS. (2002). Ion channels: structural bioinformatics and modelling. Human molecular genetics. 11 [PubMed]

Ferneyhough GB. (). A Python Library for Ion Channel modeling Master's Thesis.

Ferneyhough GB. (2015). A Python Library for Ion Channel Modeling, https://github.com/ gareth-ferneyhough/modfossa.

Fink M, Noble D. (2009). Markov models for ion channels: versatility versus identifiability and speed. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences. 367 [PubMed]

Gurkiewicz M, Korngreen A. (2007). A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm. PLoS computational biology. 3 [PubMed]

HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]

Jones SW. (2006). Are rate constants constant? The Journal of physiology. 571 [PubMed]

Keener J, Sneyd J. (2009). Mathematical Physiology I: Cellular Physiology.

Kuruma A, Hartzell HC. (2000). Bimodal control of a Ca(2+)-activated Cl(-) channel by different Ca(2+) signals. The Journal of general physiology. 115 [PubMed]

Levitt DG. (1999). Modeling of ion channels. The Journal of general physiology. 113 [PubMed]

Liebovitch LS. (1989). Testing fractal and Markov models of ion channel kinetics. Biophysical journal. 55 [PubMed]

Liebovitch LS, Scheurle D, Rusek M, Zochowski M. (2001). Fractal methods to analyze ion channel kinetics. Methods (San Diego, Calif.). 24 [PubMed]

Lowen SB, Liebovitch LS, White JA. (1999). Fractal ion-channel behavior generates fractal firing patterns in neuronal models. Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics. 59 [PubMed]

McManus OB, Weiss DS, Spivak CE, Blatz AL, Magleby KL. (1988). Fractal models are inadequate for the kinetics of four different ion channels. Biophysical journal. 54 [PubMed]

Uebachs M, Schaub C, Perez-Reyes E, Beck H. (2006). T-type Ca2+ channels encode prior neuronal activity as modulated recovery rates. The Journal of physiology. 571 [PubMed]

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