Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Dudman JT, Nolan MF. (2009). Stochastically gating ion channels enable patterned spike firing through activity-dependent modulation of spike probability. PLoS computational biology. 5 [PubMed]

Graham BP, Saudargiene A, Cobb S. (2014). Spine head calcium as a measure of summed postsynaptic activity for driving synaptic plasticity. Neural computation. 26 [PubMed]

• Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014) [Model]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

• L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Mukunda CL, Narayanan R. (2017). Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. The Journal of physiology. 595 [PubMed]

• Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017) [Model]

Mäki-Marttunen T, Mäki-Marttunen V. (2022). Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells PLoS computational biology. 18 [PubMed]

• Simulations of modulation of HCN channels in L5PCs (Mäki-Marttunen and Mäki-Marttunen, 2022) [Model]