ModelDB: Paper information

Yu T et al. (2011). The Physiome Model Repository 2. Bioinformatics (Oxford, England). 27 [PubMed]

See more from authors: Yu T · Lloyd CM · Nickerson DP · Cooling MT · Miller AK · Garny A · Terkildsen JR · Lawson J · Britten RD · Hunter PJ · Nielsen PM

References and models cited by this paper

Aspeli M. (2007). Professional Plone Development.

Baiju M. (2009). A Comprehensive Guide to Zope Component Architecture.

Bornstein BJ, Keating SM, Jouraku A, Hucka M. (2008). LibSBML: an API library for SBML. Bioinformatics (Oxford, England). 24 [PubMed]

Christie GR, Nielsen PM, Blackett SA, Bradley CP, Hunter PJ. (2009). FieldML: concepts and implementation. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences. 367 [PubMed]

Et al , Cuellar AA. (2003). An overview of CellML 1.1, a biological model description language Simulation. 79

Gamma E, Helm R, Johnson R, Vlissides J. (1994). Design patterns: Elements of reusable object-oriented Software.

Hucka M et al. (2003). The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics (Oxford, England). 19 [PubMed]

Hunter PJ, Borg TK. (2003). Integration from proteins to organs: the Physiome Project. Nature reviews. Molecular cell biology. 4 [PubMed]

Li C et al. (2010). BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC systems biology. 4 [PubMed]

Lloyd CM, Lawson JR, Hunter PJ, Nielsen PF. (2008). The CellML Model Repository. Bioinformatics (Oxford, England). 24 [PubMed]

Miller AK et al. (2010). An overview of the CellML API and its implementation. BMC bioinformatics. 11 [PubMed]

O'sullivan B. (2007). Mercurial: TheDefinitive Guide.

Olivier BG, Snoep JL. (2004). Web-based kinetic modelling using JWS Online. Bioinformatics (Oxford, England). 20 [PubMed]

References and models that cite this paper

Malik-Sheriff RS et al. (2020). BioModels-15 years of sharing computational models in life science. Nucleic acids research. 48 [PubMed]

McDougal RA, Bulanova AS, Lytton WW. (2016). Reproducibility in Computational Neuroscience Models and Simulations. IEEE transactions on bio-medical engineering. 63 [PubMed]

Muller W, Waltemath D, Henkel R, Lange M, Weise S. (2014). Chapter 3 Information Retrieval in Life Sciences: A Programmatic Survey Approaches in Integrative Bioinformatics: Towards the Virtual Cell.

Waltemath D, Wolkenhauer O. (2016). How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. IEEE transactions on bio-medical engineering. 63 [PubMed]