Abdellah M et al. (2017). Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. BMC bioinformatics. 18 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

García-Grajales JA, Rucabado G, García-Dopico A, Peña JM, Jérusalem A. (2015). Neurite, a finite difference large scale parallel program for the simulation of electrical signal propagation in neurites under mechanical loading. PloS one. 10 [PubMed]

• Neurite: electrophysiological-mechanical coupling simulation framework (Garcia-Grajales et al 2015) [Model]

Magalhães B, Hines M, Sterling T, Schüermann F. (2019). Exploiting Flow Graph of System of ODEs to Accelerate the Simulation of Biologically-Detailed Neural Networks 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS).

• Fully-Asynchronous Cache-Efficient Simulation of Detailed Neural Networks (Magalhaes et al 2019) [Model]