Bingham CS et al. (2020). ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling Frontiers in Computational Neuroscience. 14

• ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons (Bingham et al 2020) [Model]

Davison A. (2004). Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach.

Donohue DE, Ascoli GA. (2005). Local Diameter Fully Constrains Dendritic Size in Basal but not Apical Trees of CA1 Pyramidal Neurons J Comp Neurosci. 19

Donohue DE, Ascoli GA. (2008). A comparative computer simulation of dendritic morphology. PLoS computational biology. 4 [PubMed]

• A comparative computer simulation of dendritic morphology (Donohue and Ascoli 2008) [Model]

Koene RA et al. (2009). NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7 [PubMed]

• NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]

McDougal RA, Hines ML, Lytton WW. (2013). Water-tight membranes from neuronal morphology files. Journal of neuroscience methods. 220 [PubMed]

• Constructed Tessellated Neuronal Geometries (CTNG) (McDougal et al. 2013) [Model]

Nanda S, Das R, Bhattacharjee S, Cox DN, Ascoli GA. (2018). Morphological determinants of dendritic arborization neurons in Drosophila larva. Brain structure & function. 223 [PubMed]

• Morphological determinants of dendritic arborization neurons in Drosophila larva (Nanda et al 2018) [Model]

Narayanan R, Narayan A, Chattarji S. (2005). A probabilistic framework for region-specific remodeling of dendrites in three-dimensional neuronal reconstructions. Neural computation. 17 [PubMed]

• Region-specific atrophy in dendrites (Narayanan, Narayan, Chattarji, 2005) [Model]

Schneider CJ, Cuntz H, Soltesz I. (2014). Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS computational biology. 10 [PubMed]

• Generation of granule cell dendritic morphology (Schneider et al. 2014) [Model]

van Elburg RA. (2011). Stochastic Continuous Time Neurite Branching Models with Tree and Segment Dependent Rates Journal of theoretical biology. 276 [PubMed]

• Continuous time stochastic model for neurite branching (van Elburg 2011) [Model]

van Pelt J, van Ooyen A, Uylings HB. (2001). The need for integrating neuronal morphology databases and computational environments in exploring neuronal structure and function. Anatomy and embryology. 204 [PubMed]