Chen W, De Schutter E. (2014). Python-based geometry preparation and simulation visualization toolkits for STEPS. Frontiers in neuroinformatics. 8 [PubMed]

• Python-based toolkits for STEPS (Chen and De Schutter 2014) [Model]

Denizot A, Arizono M, Nägerl UV, Soula H, Berry H. (2019). Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLoS computational biology. 15 [PubMed]

• Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019) [Model]

Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G. (2014). 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. Frontiers in neuroinformatics. 8 [PubMed]

Hituri K, Linne ML. (2013). Comparison of models for IP3 receptor kinetics using stochastic simulations. PloS one. 8 [PubMed]

• IP3R model comparison (Hituri and Linne 2013) [Model]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Frontiers in computational neuroscience. 4 [PubMed]

Mattioni M, Le Novère N. (2013). Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum. PloS one. 8 [PubMed]

• Multiscale simulation of the striatal medium spiny neuron (Mattioni & Le Novere 2013) [Model]

McDougal RA, Bulanova AS, Lytton WW. (2016). Reproducibility in Computational Neuroscience Models and Simulations. IEEE transactions on bio-medical engineering. 63 [PubMed]

McDougal RA, Hines ML, Lytton WW. (2013). Reaction-diffusion in the NEURON simulator. Frontiers in neuroinformatics. 7 [PubMed]

• Reaction-diffusion in the NEURON simulator (McDougal et al 2013) [Model]

Newton AJH, McDougal RA, Hines ML, Lytton WW. (2018). Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics. Frontiers in neuroinformatics. 12 [PubMed]

• Using NEURON for reaction-diffusion modeling of extracellular dynamics (Newton et al 2018) [Model]