Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]
Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ. (2004). Potassium model for slow (2-3 Hz) in vivo neocortical paroxysmal oscillations. Journal of neurophysiology. 92 [PubMed]
Blackwell KT et al. (2019). Molecular mechanisms underlying striatal synaptic plasticity: relevance to chronic alcohol consumption and seeking. The European journal of neuroscience. 49 [PubMed]
Bouteiller JM et al. (2008). Modeling glutamatergic synapses: insights into mechanisms regulating synaptic efficacy. Journal of integrative neuroscience. 7 [PubMed]
Conte C, Lee R, Sarkar M, Terman D. (2018). A mathematical model of recurrent spreading depolarizations. Journal of computational neuroscience. 44 [PubMed]
De Schutter E. (2008). Why are computational neuroscience and systems biology so separate? PLoS computational biology. 4 [PubMed]
Djurfeldt M et al. (2010). Run-time interoperability between neuronal network simulators based on the MUSIC framework. Neuroinformatics. 8 [PubMed]
Dreier JP. (2011). The role of spreading depression, spreading depolarization and spreading ischemia in neurological disease. Nature medicine. 17 [PubMed]
Franks KM, Bartol TM, Sejnowski TJ. (2002). A Monte Carlo model reveals independent signaling at central glutamatergic synapses. Biophysical journal. 83 [PubMed]
GRAFSTEIN B. (1956). Mechanism of spreading cortical depression. Journal of neurophysiology. 19 [PubMed]
Gardner-Medwin AR. (1983). Analysis of potassium dynamics in mammalian brain tissue. The Journal of physiology. 335 [PubMed]
Halnes G et al. (2016). Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. PLoS computational biology. 12 [PubMed]
Hines ML, Markram H, Schürmann F. (2008). Fully implicit parallel simulation of single neurons. Journal of computational neuroscience. 25 [PubMed]
Humphries MD, Wood R, Gurney K. (2010). Reconstructing the three-dimensional GABAergic microcircuit of the striatum. PLoS computational biology. 6 [PubMed]
Hübel N, Hosseini-Zare MS, Žiburkus J, Ullah G. (2017). The role of glutamate in neuronal ion homeostasis: A case study of spreading depolarization. PLoS computational biology. 13 [PubMed]
Hübel N, Ullah G. (2016). Anions Govern Cell Volume: A Case Study of Relative Astrocytic and Neuronal Swelling in Spreading Depolarization. PloS one. 11 [PubMed]
Iliff JJ et al. (2012). A paravascular pathway facilitates CSF flow through the brain parenchyma and the clearance of interstitial solutes, including amyloid ß. Science translational medicine. 4 [PubMed]
Ishizuka N, Cowan WM, Amaral DG. (1995). A quantitative analysis of the dendritic organization of pyramidal cells in the rat hippocampus. The Journal of comparative neurology. 362 [PubMed]
Kager H, Wadman WJ, Somjen GG. (2000). Simulated seizures and spreading depression in a neuron model incorporating interstitial space and ion concentrations. Journal of neurophysiology. 84 [PubMed]
Krishnan GP, Bazhenov M. (2011). Ionic dynamics mediate spontaneous termination of seizures and postictal depression state. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]
Lindén H et al. (2013). LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. Frontiers in neuroinformatics. 7 [PubMed]
Macaulay N, Zeuthen T. (2012). Glial K? clearance and cell swelling: key roles for cotransporters and pumps. Neurochemical research. 37 [PubMed]
McDougal RA, Hines ML, Lytton WW. (2013). Reaction-diffusion in the NEURON simulator. Frontiers in neuroinformatics. 7 [PubMed]
McDougal RA et al. (2017). Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. Journal of computational neuroscience. 42 [PubMed]
Migliore M, Cannia C, Canavier CC. (2008). A modeling study suggesting a possible pharmacological target to mitigate the effects of ethanol on reward-related dopaminergic signaling. Journal of neurophysiology. 99 [PubMed]
Mulugeta L et al. (2018). Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. Frontiers in neuroinformatics. 12 [PubMed]
Nedergaard M, Cooper AJ, Goldman SA. (1995). Gap junctions are required for the propagation of spreading depression. Journal of neurobiology. 28 [PubMed]
Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. (2016). Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Frontiers in pharmacology. 7 [PubMed]
Nicholson C, Phillips JM. (1981). Ion diffusion modified by tortuosity and volume fraction in the extracellular microenvironment of the rat cerebellum. The Journal of physiology. 321 [PubMed]
Nicholson C, Syková E. (1998). Extracellular space structure revealed by diffusion analysis. Trends in neurosciences. 21 [PubMed]
Ray S, Bhalla US. (2008). PyMOOSE: Interoperable Scripting in Python for MOOSE. Frontiers in neuroinformatics. 2 [PubMed]
Sulzer D, Cragg SJ, Rice ME. (2016). Striatal dopamine neurotransmission: regulation of release and uptake. Basal ganglia. 6 [PubMed]
Syková E, Nicholson C. (2008). Diffusion in brain extracellular space. Physiological reviews. 88 [PubMed]
Wei Y, Ullah G, Schiff SJ. (2014). Unification of neuronal spikes, seizures, and spreading depression. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]
Wils S, De Schutter E. (2009). STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python. Frontiers in neuroinformatics. 3 [PubMed]
Xie L et al. (2013). Sleep drives metabolite clearance from the adult brain. Science (New York, N.Y.). 342 [PubMed]
Kelley C, Newton AJH, Hrabetova S, McDougal RA, Lytton WW. (2022). Multiscale Computer Modeling of Spreading Depolarization in Brain Slices eNeuro. 9 [PubMed]
Sætra MJ, Einevoll GT, Halnes G. (2021). An electrodiffusive neuron-extracellular-glia model for exploring the genesis of slow potentials in the brain PLoS computational biology. 17 [PubMed]
Sætra MJ, Ellingsrud AJ, Rognes ME. (2023). Neural activity induces strongly coupled electro-chemo-mechanical interactions and fluid flow in astrocyte networks and extracellular space-A computational study. PLoS computational biology. 19 [PubMed]
Sætra MJ, Ellingsrud AJ, Rognes ME. (2023). Neural activity induces strongly coupled electro-chemo-mechanical interactions and fluid flow in astrocyte networks and extracellular space-A computational study. PLoS computational biology. 19 [PubMed]