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• Phenomenological models of NaV1.5: Hodgkin-Huxley and kinetic formalisms (Andreozzi et al 2019) [Model]

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Cao F, Ralph MR, Stinchcombe AR. (2022). A Phenomenological Mouse Circadian Pacemaker Model Journal of biological rhythms. 37 [PubMed]

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• An electrophysiological model of GABAergic double bouquet cells (Chrysanthidis et al. 2019) [Model]

Crone JC et al. (2019). Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator Frontiers in Neuroinformatics. 13

• Large scale neocortical model for PGENESIS (Crone et al 2019) [Model]
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Denizot A, Arizono M, Nägerl UV, Soula H, Berry H. (2019). Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLoS computational biology. 15 [PubMed]

• Simulation of calcium signaling in fine astrocytic processes (Denizot et al 2019) [Model]

Diekman CO, Thomas PJ, Wilson CG. (2017). Eupnea, tachypnea, and autoresuscitation in a closed-loop respiratory control model. Journal of neurophysiology. 118 [PubMed]

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Ebner C, Clopath C, Jedlicka P, Cuntz H. (2019). Unifying Long-Term Plasticity Rules for Excitatory Synapses by Modeling Dendrites of Cortical Pyramidal Neurons. Cell reports. 29 [PubMed]

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• Hypothalamic CRH neurons represent physiological memory of positive and negative experience (Füzesi et al., 2023) [Model]

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• A general model of hippocampal and dorsal striatal learning and decision making (Geerts et al 2020) [Model]

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• Bump Attractor Models: Delayed Response & Recognition Span - spatial condition (Ibanez et al 2019) [Model]

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Liu Y, Milton J, Campbell SA. (2019). Outgrowing seizures in Childhood Absence Epilepsy: time delays and bistability. Journal of computational neuroscience. 46 [PubMed]

• Thalamocortical loop with delay for investigation of absence epilepsy (Liu et al 2019) [Model]

Lombardi A, Jedlicka P, Luhmann HJ, Kilb W. (2019). Interactions Between Membrane Resistance, GABA-A Receptor Properties, Bicarbonate Dynamics and Cl-Transport Shape Activity-Dependent Changes of Intracellular Cl- Concentration International journal of molecular sciences. 20 [PubMed]

• Factors contribution to GDP-induced [Cl-]i transients (Lombardi et al 2019) [Model]

Malik-Sheriff RS et al. (2020). BioModels-15 years of sharing computational models in life science. Nucleic acids research. 48 [PubMed]

Manis PB, Campagnola L. (2018). A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hearing research. 360 [PubMed]

• Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018) [Model]

Manninen T, Saudargiene A, Linne ML. (2020). Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex. PLoS computational biology. 16 [PubMed]

• A synapse model for developing somatosensory cortex (Manninen et al 2020) [Model]

McDougal RA, Dalal I, Morse TM, Shepherd GM. (2019). Automated Metadata Suggestion During Repository Submission. Neuroinformatics. 17 [PubMed]

• Automated metadata suggester (McDougal et al 2018) [Model]

Muddapu VR, Mandali A, Chakravarthy VS, Ramaswamy S. (2019). A Computational Model of Loss of Dopaminergic Cells in Parkinson's Disease Due to Glutamate-Induced Excitotoxicity. Frontiers in neural circuits. 13 [PubMed]

• Excitotoxic loss of dopaminergic cells in PD (Muddapu et al 2019) [Model]

Neumaier F, Alpdogan S, Hescheler J, Schneider T. (2020). Zn2+-induced changes in Cav2.3 channel function: An electrophysiological and modeling study The Journal of general physiology. 152 [PubMed]

• A Markov model of human Cav2.3 channels and their modulation by Zn2+ (Neumaier et al 2020) [Model]

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• Using NEURON for reaction-diffusion modeling of extracellular dynamics (Newton et al 2018) [Model]

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• Excitation Properties of Computational Models of Unmyelinated Peripheral Axons (Pelot et al., 2021) [Model]

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• Paranoia as a deficit in non-social belief updating (Reed et al 2020) [Model]

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• GC model (Beining et al 2017) [Model]
• Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017) [Model]

Sherfey JS et al. (2018). DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. Frontiers in neuroinformatics. 12 [PubMed]

• DynaSim: a MATLAB toolbox for neural modeling and simulation (Sherfey et al 2018) [Model]

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• Distance-dependent inhibition in the hippocampus (Strüber et al. 2017) [Model]

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• Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21) [Model]

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• Glutamate spillover and plateau potentials (Trpevski et al., 2023) [Model]

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• External Tufted Cell Model (Ryan Viertel, Alla Borisyuk 2019) [Model]

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• Resurgent sodium transient current in zebra finch RA (Zemel et al., 2021) [Model]