Gidon A, Segev I. (2012). Principles governing the operation of synaptic inhibition in dendrites. Neuron. 75 [PubMed]

• Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

• L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Hay E, Schürmann F, Markram H, Segev I. (2013). Preserving axosomatic spiking features despite diverse dendritic morphology. Journal of neurophysiology. 109 [PubMed]

• Preserving axosomatic spiking features despite diverse dendritic morphology (Hay et al., 2013) [Model]

Koene RA et al. (2009). NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7 [PubMed]

• NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Mäki-Marttunen T, Mäki-Marttunen V. (2022). Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells PLoS computational biology. 18 [PubMed]

• Simulations of modulation of HCN channels in L5PCs (Mäki-Marttunen and Mäki-Marttunen, 2022) [Model]

Reimann MW, Horlemann AL, Ramaswamy S, Muller EB, Markram H. (2017). Morphological Diversity Strongly Constrains Synaptic Connectivity and Plasticity. Cerebral cortex (New York, N.Y. : 1991). 27 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Reimann MW, King JG, Muller EB, Ramaswamy S, Markram H. (2015). An algorithm to predict the connectome of neural microcircuits. Frontiers in computational neuroscience. 9 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Vascak M, Sun J, Baer M, Jacobs KM, Povlishock JT. (2017). Mild Traumatic Brain Injury Evokes Pyramidal Neuron Axon Initial Segment Plasticity and Diffuse Presynaptic Inhibitory Terminal Loss. Frontiers in cellular neuroscience. 11 [PubMed]

Zylbertal A, Yarom Y, Wagner S. (2017). The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study Frontiers in computational neuroscience. 11 [PubMed]

• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

van Ooyen A et al. (2014). Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PloS one. 9 [PubMed]

• NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]