Al-Kofahi KA et al. (2002). Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society. 6 [PubMed]

Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Baseer N et al. (2012). Projection neurons in lamina III of the rat spinal cord are selectively innervated by local dynorphin-containing excitatory neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Brunjes PC, Kenerson MC. (2010). The anterior olfactory nucleus: quantitative study of dendritic morphology. The Journal of comparative neurology. 518 [PubMed]

Cannon RC, Turner DA, Pyapali GK, Wheal HV. (1998). An on-line archive of reconstructed hippocampal neurons. Journal of neuroscience methods. 84 [PubMed]

Carey R, Bell G. (). The Annotated VRML 2.0 Reference Manual.

Cullheim S, Fleshman JW, Glenn LL, Burke RE. (1987). Membrane area and dendritic structure in type-identified triceps surae alpha motoneurons. The Journal of comparative neurology. 255 [PubMed]

Cuntz H, Forstner F, Borst A, Häusser M. (2010). One rule to grow them all: a general theory of neuronal branching and its practical application. PLoS computational biology. 6 [PubMed]

Djurisic M, Popovic M, Carnevale N, Zecevic D. (2008). Functional structure of the mitral cell dendritic tuft in the rat olfactory bulb. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Functional structure of mitral cell dendritic tuft (Djurisic et al. 2008) [Model]

Donohue DE, Ascoli GA. (2008). A comparative computer simulation of dendritic morphology. PLoS computational biology. 4 [PubMed]

• A comparative computer simulation of dendritic morphology (Donohue and Ascoli 2008) [Model]

Glaser JR, Glaser EM. (1990). Neuron imaging with Neurolucida--a PC-based system for image combining microscopy. Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society. 14 [PubMed]

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]

Igarashi KM et al. (2012). Parallel mitral and tufted cell pathways route distinct odor information to different targets in the olfactory cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Ishizuka N, Cowan WM, Amaral DG. (1995). A quantitative analysis of the dendritic organization of pyramidal cells in the rat hippocampus. The Journal of comparative neurology. 362 [PubMed]

Kaynig V et al. (2015). Large-scale automatic reconstruction of neuronal processes from electron microscopy images. Medical image analysis. 22 [PubMed]

Kole MH et al. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nature neuroscience. 11 [PubMed]

• Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008) [Model]

McDougal RA, Hines ML, Lytton WW. (2013). Water-tight membranes from neuronal morphology files. Journal of neuroscience methods. 220 [PubMed]

• Constructed Tessellated Neuronal Geometries (CTNG) (McDougal et al. 2013) [Model]

Migliore M, Cavarretta F, Hines ML, Shepherd GM. (2014). Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Frontiers in computational neuroscience. 8 [PubMed]

• 3D model of the olfactory bulb (Migliore et al. 2014) [Model]

Nadkarni PM et al. (1999). Organization of heterogeneous scientific data using the EAV/CR representation. Journal of the American Medical Informatics Association : JAMIA. 6 [PubMed]

Poirazi P, Markaki M, Orphanoudakis S. (2005). Modelling reduced excitability in aged CA1 neurons as a calcium-dependent process Neurocomputing. 65-66

• Modelling reduced excitability in aged CA1 neurons as a Ca-dependent process (Markaki et al. 2005) [Model]

Radman T, Ramos RL, Brumberg JC, Bikson M. (2009). Role of cortical cell type and morphology in subthreshold and suprathreshold uniform electric field stimulation in vitro. Brain stimulation. 2 [PubMed]

Tukker JJ et al. (2013). Distinct dendritic arborization and in vivo firing patterns of parvalbumin-expressing basket cells in the hippocampal area CA3. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33 [PubMed]

Varoquaux G, Ramachandran P. (2011). Mayavi: 3D visualization of scientific data Comput Sci Eng. 13

Wang X, Kruth JP, Laoui T, Froyen L. (2003). Lasers and materials in selective laser sintering Assembly Autom. 23

Wang Y, Gupta A, Toledo-Rodriguez M, Wu CZ, Markram H. (2002). Anatomical, physiological, molecular and circuit properties of nest basket cells in the developing somatosensory cortex. Cerebral cortex (New York, N.Y. : 1991). 12 [PubMed]

Wolf S, Grein S, Queisser G. (2013). Employing NeuGen 2.0 to automatically generate realistic morphologies of hippocampal neurons and neural networks in 3D. Neuroinformatics. 11 [PubMed]

Zubler F, Douglas R. (2009). A framework for modeling the growth and development of neurons and networks. Frontiers in computational neuroscience. 3 [PubMed]

Chen W, De Schutter E. (2017). Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. Frontiers in neuroinformatics. 11 [PubMed]

• Parallel STEPS: Large scale stochastic spatial reaction-diffusion simulat. (Chen & De Schutter 2017) [Model]