Chen W, De Schutter E. (2014). Python-based geometry preparation and simulation visualization toolkits for STEPS. Frontiers in neuroinformatics. 8 [PubMed]

• Python-based toolkits for STEPS (Chen and De Schutter 2014) [Model]

Chen W, De Schutter E. (2017). Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. Frontiers in neuroinformatics. 11 [PubMed]

• Parallel STEPS: Large scale stochastic spatial reaction-diffusion simulat. (Chen & De Schutter 2017) [Model]

Kim M et al. (2011). Colocalization of protein kinase A with adenylyl cyclase enhances protein kinase A activity during induction of long-lasting long-term-potentiation. PLoS computational biology. 7 [PubMed]

• Hippocampus CA1: Simulations of LTP signaling pathways (Kim M et al. 2011) [Model]

Oliveira RF, Kim M, Blackwell KT. (2012). Subcellular location of PKA controls striatal plasticity: stochastic simulations in spiny dendrites. PLoS computational biology. 8 [PubMed]

• Dopamine activation of signaling pathways in a medium spiny projection neuron (Oliveira et al. 2012) [Model]