Al-Kofahi KA et al. (2002). Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society. 6 [PubMed]
Anderson SA, Classey JD, Condé F, Lund JS, Lewis DA. (1995). Synchronous development of pyramidal neuron dendritic spines and parvalbumin-immunoreactive chandelier neuron axon terminals in layer III of monkey prefrontal cortex. Neuroscience. 67 [PubMed]
Baer SM, Rinzel J. (1991). Propagation of dendritic spikes mediated by excitable spines: a continuum theory. Journal of neurophysiology. 65 [PubMed]
Bartesaghi R, Severi S, Guidi S. (2003). Effects of early environment on pyramidal neuron morphology in field CA1 of the guinea-pig. Neuroscience. 116 [PubMed]
Beeman D, Bower J. (1994). The Book of GENESIS: exploring realistic neural models with the GEneral NEural Simulation System.
Braun K, Scheich H, Zuschratter W, Hess A, Watzel R. (1995). Detectionof dendritic spines in 3-dimensional images.
Braun K et al. (1997). Restoration of three-dimensional quasi-binary images from confocal microscopy and its application to dendritic trees Three-dimensional microscopy: Image acquisition and processing IV, Proceedings of SPIE.
Cannon RC, Turner DA, Pyapali GK, Wheal HV. (1998). An on-line archive of reconstructed hippocampal neurons. Journal of neuroscience methods. 84 [PubMed]
Cohen AR, Roysam B, Turner JN. (1994). Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data. Journal of microscopy. 173 [PubMed]
DeFelipe J, Fariñas I. (1992). The pyramidal neuron of the cerebral cortex: morphological and chemical characteristics of the synaptic inputs. Progress in neurobiology. 39 [PubMed]
Duan H, Wearne SL, Morrison JH, Hof PR. (2002). Quantitative analysis of the dendritic morphology of corticocortical projection neurons in the macaque monkey association cortex. Neuroscience. 114 [PubMed]
Duan H et al. (2003). Age-related dendritic and spine changes in corticocortically projecting neurons in macaque monkeys. Cerebral cortex (New York, N.Y. : 1991). 13 [PubMed]
Elston GN. (2000). Pyramidal cells of the frontal lobe: all the more spinous to think with. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]
Elston GN, Rockland KS. (2002). The pyramidal cell of the sensorimotor cortex of the macaque monkey: phenotypic variation. Cerebral cortex (New York, N.Y. : 1991). 12 [PubMed]
Elston GN, Rosa MG. (1997). The occipitoparietal pathway of the macaque monkey: comparison of pyramidal cell morphology in layer III of functionally related cortical visual areas. Cerebral cortex (New York, N.Y. : 1991). 7 [PubMed]
Elston GN, Rosa MG. (1998). Morphological variation of layer III pyramidal neurones in the occipitotemporal pathway of the macaque monkey visual cortex. Cerebral cortex (New York, N.Y. : 1991). 8 [PubMed]
Elston GN, Tweedale R, Rosa MG. (1999). Cellular heterogeneity in cerebral cortex: a study of the morphology of pyramidal neurones in visual areas of the marmoset monkey. The Journal of comparative neurology. 415 [PubMed]
Elston GN, Tweedale R, Rosa MG. (1999). Cortical integration in the visual system of the macaque monkey: large-scale morphological differences in the pyramidal neurons in the occipital, parietal and temporal lobes. Proceedings. Biological sciences. 266 [PubMed]
Elston GN, Tweedale R, Rosa MG. (1999). Supragranular pyramidal neurones in the medial posterior parietal cortex of the macaque monkey: morphological heterogeneity in subdivisions of area 7. Neuroreport. 10 [PubMed]
Feldman ML. (1984). Morphology of the neocortical pyramidal neuron. Cerebral cortex:Cellular components of the cerebral cortex. 1
Feldman ML, Peters A. (1979). A technique for estimating total spine numbers on Golgi-impregnated dendrites. The Journal of comparative neurology. 188 [PubMed]
Ford-Holevinski TS, Dahlberg TA, Agranoff BW. (1986). A microcomputer-based image analyzer for quantitating neurite outgrowth. Brain research. 368 [PubMed]
Gewaltig MO et al. (2002). Neuro ML for plug and play neuronal modeling Neurocomputation. 44
Gilbert CD, Wiesel TN. (1992). Receptive field dynamics in adult primary visual cortex. Nature. 356 [PubMed]
Glantz LA, Lewis DA. (2000). Decreased dendritic spine density on prefrontal cortical pyramidal neurons in schizophrenia. Archives of general psychiatry. 57 [PubMed]
Goddard NH et al. (2001). Towards NeuroML: model description methods for collaborative modelling in neuroscience. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 356 [PubMed]
Harris KM, Jensen FE, Tsao B. (1992). Three-dimensional structure of dendritic spines and synapses in rat hippocampus (CA1) at postnatal day 15 and adult ages: implications for the maturation of synaptic physiology and long-term potentiation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 12 [PubMed]
Harris KM, Stevens JK. (1988). Dendritic spines of rat cerebellar Purkinje cells: serial electron microscopy with reference to their biophysical characteristics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 8 [PubMed]
Hawrylak N, Wallace C, Greenough W. (1991). Srudies of synapric srrucrural modificarion afrer long-rerm poranriarion and kindling. conrext for a molecular morphology. Long-term Potentiation: A Debate Of Current Issues.
Hines ML. (1994). The NEURON simulation program Neural Network Simulation Environments.
Holmes WR. (1989). The role of dendritic diameters in maximizing the effectiveness of synaptic inputs. Brain research. 478 [PubMed]
Hübener M, Schwarz C, Bolz J. (1990). Morphological types of projection neurons in layer 5 of cat visual cortex. The Journal of comparative neurology. 301 [PubMed]
Irwin SA et al. (2002). Dendritic spine and dendritic field characteristics of layer V pyramidal neurons in the visual cortex of fragile-X knockout mice. American journal of medical genetics. 111 [PubMed]
Irwin SA et al. (2001). Abnormal dendritic spine characteristics in the temporal and visual cortices of patients with fragile-X syndrome: a quantitative examination. American journal of medical genetics. 98 [PubMed]
Jacobs B, Driscoll L, Schall M. (1997). Life-span dendritic and spine changes in areas 10 and 18 of human cortex: a quantitative Golgi study. The Journal of comparative neurology. 386 [PubMed]
Jacobs B et al. (2001). Regional dendritic and spine variation in human cerebral cortex: a quantitative golgi study. Cerebral cortex (New York, N.Y. : 1991). 11 [PubMed]
Koh IY, Lindquist WB, Zito K, Nimchinsky EA, Svoboda K. (2002). An image analysis algorithm for dendritic spines. Neural computation. 14 [PubMed]
Koh YY. (2001). Automated recognition algorithms for neural studies Unpublished doctoral dissertation, Stony Brook University.
Kolb B, Gibb R, Gorny G. (2003). Experience-dependent changes in dendritic arbor and spine density in neocortex vary qualitatively with age and sex. Neurobiology of learning and memory. 79 [PubMed]
Krichmar JL, Nasuto SJ, Scorcioni R, Washington SD, Ascoli GA. (2002). Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. Brain research. 941 [PubMed]
Lindquist WB, Oh W. (1999). Image thresholding by indicator kriging IEEE Trans Pattern Anal Mach Intell. 21
Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]
Major G, Larkman AU, Stratford KJ, Mason AJR, Jack JJB. (1989). The modelling of pyramidal neurones in the visual cortex The Computing Neuron.
Maravall M, Koh IY, Lindquist WB, Svoboda K. (2004). Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortex. Cerebral cortex (New York, N.Y. : 1991). 14 [PubMed]
Nimchinsky EA, Hof PR, Young WG, Morrison JH. (1996). Neurochemical, morphologic, and laminar characterization of cortical projection neurons in the cingulate motor areas of the macaque monkey. The Journal of comparative neurology. 374 [PubMed]
Nimchinsky EA, Oberlander AM, Svoboda K. (2001). Abnormal development of dendritic spines in FMR1 knock-out mice. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]
Nimchinsky EA, Sabatini BL, Svoboda K. (2002). Structure and function of dendritic spines. Annual review of physiology. 64 [PubMed]
Page TL et al. (2002). Morphological alterations in neurons forming corticocortical projections in the neocortex of aged Patas monkeys. Neuroscience letters. 317 [PubMed]
Purpura DP. (1974). Dendritic spine "dysgenesis" and mental retardation. Science (New York, N.Y.). 186 [PubMed]
Ramon y Cajal S. (1893). Neue Darstellung vom histologischen Bau des Central nerven systems Arch Anat Entwickl.
Rodriguez A et al. (2003). Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images. Methods (San Diego, Calif.). 30 [PubMed]
Rumberger A, Schmidt M, Lohmann H, Hoffmann KP. (1998). Correlation of electrophysiology, morphology, and functions in corticotectal and corticopretectal projection neurons in rat visual cortex. Experimental brain research. 119 [PubMed]
Rusakov DA, Stewart MG. (1995). Quantification of dendritic spine populations using image analysis and a tilting disector. Journal of neuroscience methods. 60 [PubMed]
SHOLL DA. (1953). Dendritic organization in the neurons of the visual and motor cortices of the cat. Journal of anatomy. 87 [PubMed]
Scheibel A, Conrad T, Perdue S, Tomiyasu U, Wechsler A. (1990). A quantitative study of dendrite complexity in selected areas of the human cerebral cortex. Brain and cognition. 12 [PubMed]
Scheibel AB et al. (1985). Dendritic organization of the anterior speech area. Experimental neurology. 87 [PubMed]
Seib LM, Wellman CL. (2003). Daily injections alter spine density in rat medial prefrontal cortex. Neuroscience letters. 337 [PubMed]
Shapiro SS, Wilk MB. (1965). An analysis of variance test for normality (complete samples) Biometrika. 52
Soloway AS, Pucak ML, Melchitzky DS, Lewis DA. (2002). Dendritic morphology of callosal and ipsilateral projection neurons in monkey prefrontal cortex. Neuroscience. 109 [PubMed]
Surkis A, Peskin CS, Tranchina D, Leonard CS. (1998). Recovery of cable properties through active and passive modeling of subthreshold membrane responses from laterodorsal tegmental neurons. Journal of neurophysiology. 80 [PubMed]
Tanzi E. (1893). I fatti i le induzioni nellodierna istologia del sistema nervoso Riv Sper Freniatr Med Leg Alien Ment. 19
Turner JN, Holmes M, Szarowski DH, Ancin H, Becker DE. (1997). Automated image analysis technologies for biological 3D light microscopy Int J Imag Syst Tech. 8
Turner JN et al. (2000). Three-dimensional light microscopy: Observation of thick objects J Histotechnol. 23
Uylings HB, Ruiz-Marcos A, van Pelt J. (1986). The metric analysis of three-dimensional dendritic tree patterns: a methodological review. Journal of neuroscience methods. 18 [PubMed]
Weaver CM. (2003). Automated morphology of neural cells Unpublished doctoral dissertation, Stony Brook University.
Weaver CM, Lindquist WB. (2003). 3DMA-neuron users manual Available online at: http:--www.ams.sunysb.edu-lindquis-3dma neuron-3dma neuron.html.
Weaver CM, Pinezich JD, Lindquist WB, Vazquez ME. (2003). An algorithm for neurite outgrowth reconstruction. Journal of neuroscience methods. 124 [PubMed]
Wilson CJ. (1984). Passive cable properties of dendritic spines and spiny neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 4 [PubMed]
Wilson CJ. (1988). Cellular mechanisms controlling the strength of synapses. Journal of electron microscopy technique. 10 [PubMed]
Wilson CJ, Groves PM, Kitai ST, Linder JC. (1983). Three-dimensional structure of dendritic spines in the rat neostriatum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 3 [PubMed]
de Lima AD, Voigt T, Morrison JH. (1990). Morphology of the cells within the inferior temporal gyrus that project to the prefrontal cortex in the macaque monkey. The Journal of comparative neurology. 296 [PubMed]
Yamasaki T, Isokawa T, Matsui N, Ikeno H, Kanzaki R. (2006). Reconstruction and simulation for three-dimensional morphological structure of insect neurons Neurocomputing. 69