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• Rhesus Monkey Layer 3 Pyramidal Neurons: V1 vs PFC (Amatrudo, Weaver et al. 2012) [Model]

Carnevale NT, Tsai KY, Claiborne BJ, Brown TH. (1997). Comparative electrotonic analysis of three classes of rat hippocampal neurons. Journal of neurophysiology. 78 [PubMed]

Gulledge AT, Carnevale NT, Stuart GJ. (2012). Electrical advantages of dendritic spines. PloS one. 7 [PubMed]

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• Spatially-varying glutamate diffusion coefficient at CA1 synaptic cleft space (Gupta et al. 2016) [Model]

Holmes WR, Ambros-Ingerson J, Grover LM. (2006). Fitting experimental data to models that use morphological data from public databases. Journal of computational neuroscience. 20 [PubMed]

Holmes WR, Grover LM. (2006). Quantifying the magnitude of changes in synaptic level parameters with long-term potentiation. Journal of neurophysiology. 96 [PubMed]

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• A two-stage model of dendritic integration in CA1 pyramidal neurons (Katz et al. 2009) [Model]

Nicholson DA et al. (2006). Distance-dependent differences in synapse number and AMPA receptor expression in hippocampal CA1 pyramidal neurons. Neuron. 50 [PubMed]

O'Donnell C, Nolan MF, van Rossum MC. (2011). Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) [Model]

Petroccione MA et al. (2023). Neuronal glutamate transporters control reciprocal inhibition and gain modulation in D1 medium spiny neurons. eLife. 12 [PubMed]

• D1-MSN: The effect of EAAC1 on firing frequency (Petroccione et al., 2023) [Model]

Polsky A, Mel B, Schiller J. (2009). Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

• NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]

Rusakov DA, Richter-Levin G, Stewart MG, Bliss TV. (1997). Reduction in spine density associated with long-term potentiation in the dentate gyrus suggests a spine fusion-and-branching model of potentiation. Hippocampus. 7 [PubMed]

• Spine fusion and branching affects synaptic response (Rusakov et al 1996, 1997) [Model]

Tsay D, Yuste R. (2002). Role of dendritic spines in action potential backpropagation: a numerical simulation study. Journal of neurophysiology. 88 [PubMed]

Vetter P, Roth A, Häusser M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of neurophysiology. 85 [PubMed]

• Dendritica (Vetter et al 2001) [Model]

Weaver CM, Hof PR, Wearne SL, Lindquist WB. (2004). Automated algorithms for multiscale morphometry of neuronal dendrites. Neural computation. 16 [PubMed]