Akin M, Onderdonk A, Guo Y. (2017). Effects of local network topology on the functional reconstruction of spiking neural network models. Applied network science. 2 [PubMed]

Dyhrfjeld-Johnsen J et al. (2007). Topological determinants of epileptogenesis in large-scale structural and functional models of the dentate gyrus derived from experimental data. Journal of neurophysiology. 97 [PubMed]

• Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

Gal E et al. (2017). Rich cell-type-specific network topology in neocortical microcircuitry. Nature neuroscience. 20 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Humphries MD, Gurney K, Prescott TJ. (2006). The brainstem reticular formation is a small-world, not scale-free, network. Proceedings. Biological sciences. 273 [PubMed]

• Medial reticular formation of the brainstem: anatomy and dynamics (Humphries et al. 2006, 2007) [Model]

Humphries MD, Wood R, Gurney K. (2009). Dopamine-modulated dynamic cell assemblies generated by the GABAergic striatal microcircuit. Neural networks : the official journal of the International Neural Network Society. 22 [PubMed]

• Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009) [Model]

Kitano K, Fukai T. (2007). Variability v.s. synchronicity of neuronal activity in local cortical network models with different wiring topologies. Journal of computational neuroscience. 23 [PubMed]

Mäki-Marttunen T, Aćimović J, Ruohonen K, Linne ML. (2013). Structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework. PloS one. 8 [PubMed]

• Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013) [Model]

Shao J, Tsao TH, Butera R. (2006). Bursting without slow kinetics: a role for a small world? Neural computation. 18 [PubMed]

van Ooyen A et al. (2014). Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PloS one. 9 [PubMed]

• NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]