ModelDB: Models that contain XML

Simulation Environment: XML

Note: this list includes both models hosted here at ModelDB and models where have metadata and link to the sourcecode somewhere else. These may also be viewed separately; see the browse by simulator page.

A nicotinic acetylcholine receptor kinetic model (Edelstein et al. 1996)
Event-related simulation of neural processing in complex visual scenes (Mihalas et al. 2011)
Spikes,synchrony,and attentive learning by laminar thalamocort. circuits (Grossberg & Versace 2007)
Squid axon (Hodgkin, Huxley 1952) (SBML, XPP, other)

http://senselab.med.yale.edu/senselab/modeldb/xml_modeling_homepages.html
Systems Biology Markup Language (<a href="http://sbml.org/">SBML</a>), Cell Markup Language (<a href="http://cellml.org">CellML</a>), and XML for computational neurosicence (<a href="http://www.neuroml.org/">NeuroML</a>) are specifications for storing biological mathematical models in XML.

Top authors for XML:

Edelstein SJ (1)
Schaad O (1)
Henry E (1)
Bertrand D (1)
Changeux JP (1)
Mihalas S (1)
Dong Y (1)
von der Heydt R (1)
Niebur E (1)
Grossberg S (1)

Top concepts studied with XML:

Ion Channel Kinetics (1)
Sensory processing (1)
Vision (1)
Pattern Recognition (1)
Activity Patterns (1)
Oscillations (1)
Synchronization (1)
Working memory (1)
STDP (1)
Spatial Navigation (1)

Top neurons studied with XML:

Thalamus geniculate nucleus/lateral principal GLU cell (1)
Thalamus reticular nucleus GABA cell (1)
Neocortex L5/6 pyramidal GLU cell (1)
Neocortex L2/3 pyramidal GLU cell (1)
Squid axon (1)

Top currents studied with XML:

I Na,t (2)
I K (2)
I T low threshold (1)
I Potassium (1)

Top references cited by these models:

Buonomano DV, Merzenich MM. (1995). Temporal information transformed into a spatial code by a neural network with realistic properties. Science (New York, N.Y.). 267 (1)
Hopfield JJ. (1995). Pattern recognition computation using action potential timing for stimulus representation. Nature. 376 (1)
Clements JD, Lester RA, Tong G, Jahr CE, Westbrook GL. (1992). The time course of glutamate in the synaptic cleft. Science (New York, N.Y.). 258 (1)
Kanai Y, Smith CP, Hediger MA. (1993). The elusive transporters with a high affinity for glutamate. Trends in neurosciences. 16 (1)
Bartol TM, Land BR, Salpeter EE, Salpeter MM. (1991). Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction. Biophysical journal. 59 (1)