Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)


Chavlis S, Petrantonakis PC, Poirazi P. (2017). Dendrites of dentate gyrus granule cells contribute to pattern separation by controlling sparsity. Hippocampus. 27 [PubMed]

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References and models cited by this paper

Aimone JB, Deng W, Gage FH. (2010). Adult neurogenesis: integrating theories and separating functions. Trends in cognitive sciences. 14 [PubMed]

Aimone JB, Deng W, Gage FH. (2011). Resolving new memories: a critical look at the dentate gyrus, adult neurogenesis, and pattern separation. Neuron. 70 [PubMed]

Ally BA, Hussey EP, Ko PC, Molitor RJ. (2013). Pattern separation and pattern completion in Alzheimer's disease: evidence of rapid forgetting in amnestic mild cognitive impairment. Hippocampus. 23 [PubMed]

Amaral DG, Ishizuka N, Claiborne B. (1990). Neurons, numbers and the hippocampal network. Progress in brain research. 83 [PubMed]

Aradi I, Holmes WR. (1999). Role of multiple calcium and calcium-dependent conductances in regulation of hippocampal dentate granule cell excitability. Journal of computational neuroscience. 6 [PubMed]

Bakker A, Kirwan CB, Miller M, Stark CE. (2008). Pattern separation in the human hippocampal CA3 and dentate gyrus. Science (New York, N.Y.). 319 [PubMed]

Bartos M, Vida I, Frotscher M, Geiger JR, Jonas P. (2001). Rapid signaling at inhibitory synapses in a dentate gyrus interneuron network. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]

Bolz L, Heigele S, Bischofberger J. (2015). Running Improves Pattern Separation during Novel Object Recognition. Brain plasticity (Amsterdam, Netherlands). 1 [PubMed]

Brette R, Gerstner W. (2005). Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. Journal of neurophysiology. 94 [PubMed]

Brette R, Goodman DF. (2011). Vectorized algorithms for spiking neural network simulation. Neural computation. 23 [PubMed]

Buckmaster PS, Jongen-Rêlo AL. (1999). Highly specific neuron loss preserves lateral inhibitory circuits in the dentate gyrus of kainate-induced epileptic rats. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Burkitt AN. (2006). A review of the integrate-and-fire neuron model: I. Homogeneous synaptic input. Biological cybernetics. 95 [PubMed]

Chiang PH et al. (2012). GABA is depolarizing in hippocampal dentate granule cells of the adolescent and adult rats. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Claiborne BJ, Amaral DG, Cowan WM. (1990). Quantitative, three-dimensional analysis of granule cell dendrites in the rat dentate gyrus. The Journal of comparative neurology. 302 [PubMed]

Danielson NB et al. (2016). Distinct Contribution of Adult-Born Hippocampal Granule Cells to Context Encoding. Neuron. 90 [PubMed]

Das T, Ivleva EI, Wagner AD, Stark CE, Tamminga CA. (2014). Loss of pattern separation performance in schizophrenia suggests dentate gyrus dysfunction. Schizophrenia research. 159 [PubMed]

Deng W, Aimone JB, Gage FH. (2010). New neurons and new memories: how does adult hippocampal neurogenesis affect learning and memory? Nature reviews. Neuroscience. 11 [PubMed]

Einstein G, Buranosky R, Crain BJ. (1994). Dendritic pathology of granule cells in Alzheimer's disease is unrelated to neuritic plaques. The Journal of neuroscience : the official journal of the Society for Neuroscience. 14 [PubMed]

Engin E et al. (2015). Tonic Inhibitory Control of Dentate Gyrus Granule Cells by a5-Containing GABAA Receptors Reduces Memory Interference. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]

Erevitt BS, Skrondal A. (2010). The Cambridge Dictionary of Statistics, 4th ed..

Eriksson PS. (2003). Neurogenesis and its implications for regeneration in the adult brain. Journal of rehabilitation medicine. [PubMed]

Faghihi F, Moustafa AA. (2015). A computational model of pattern separation efficiency in the dentate gyrus with implications in schizophrenia. Frontiers in systems neuroscience. 9 [PubMed]

Geiger JR, Lübke J, Roth A, Frotscher M, Jonas P. (1997). Submillisecond AMPA receptor-mediated signaling at a principal neuron-interneuron synapse. Neuron. 18 [PubMed]

Goodman DF, Brette R. (2009). The brian simulator. Frontiers in neuroscience. 3 [PubMed]

Hafting T, Fyhn M, Molden S, Moser MB, Moser EI. (2005). Microstructure of a spatial map in the entorhinal cortex. Nature. 436 [PubMed]

Hamming RW. (1950). Error detecting and error correcting codes Bell Syst Tech J. 26

Harney SC, Jones MV. (2002). Pre- and postsynaptic properties of somatic and dendritic inhibition in dentate gyrus. Neuropharmacology. 43 [PubMed]

Henze DA, Buzsáki G. (2007). Hilar mossy cells: functional identification and activity in vivo. Progress in brain research. 163 [PubMed]

Ikrar T et al. (2013). Adult neurogenesis modifies excitability of the dentate gyrus. Frontiers in neural circuits. 7 [PubMed]

Izhikevich EM. (2003). Simple model of spiking neurons. IEEE transactions on neural networks. 14 [PubMed]

Jahr CE, Stevens CF. (1990). Voltage dependence of NMDA-activated macroscopic conductances predicted by single-channel kinetics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 10 [PubMed]

Jain S et al. (2012). Arf4 determines dentate gyrus-mediated pattern separation by regulating dendritic spine development. PloS one. 7 [PubMed]

Jinde S et al. (2012). Hilar mossy cell degeneration causes transient dentate granule cell hyperexcitability and impaired pattern separation. Neuron. 76 [PubMed]

Jinde S, Zsiros V, Nakazawa K. (2013). Hilar mossy cell circuitry controlling dentate granule cell excitability. Frontiers in neural circuits. 7 [PubMed]

Johnston ST, Shtrahman M, Parylak S, Gonçalves JT, Gage FH. (2016). Paradox of pattern separation and adult neurogenesis: A dual role for new neurons balancing memory resolution and robustness. Neurobiology of learning and memory. 129 [PubMed]

Jung MW, McNaughton BL. (1993). Spatial selectivity of unit activity in the hippocampal granular layer. Hippocampus. 3 [PubMed]

Kirwan CB, Stark CE. (2007). Overcoming interference: an fMRI investigation of pattern separation in the medial temporal lobe. Learning & memory (Cold Spring Harbor, N.Y.). 14 [PubMed]

Kneisler TB, Dingledine R. (1995). Spontaneous and synaptic input from granule cells and the perforant path to dentate basket cells in the rat hippocampus. Hippocampus. 5 [PubMed]

Krueppel R, Remy S, Beck H. (2011). Dendritic integration in hippocampal dentate granule cells. Neuron. 71 [PubMed]

Lacy JW, Yassa MA, Stark SM, Muftuler LT, Stark CE. (2011). Distinct pattern separation related transfer functions in human CA3/dentate and CA1 revealed using high-resolution fMRI and variable mnemonic similarity. Learning & memory (Cold Spring Harbor, N.Y.). 18 [PubMed]

Larimer P, Strowbridge BW. (2008). Nonrandom local circuits in the dentate gyrus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

Leutgeb JK, Leutgeb S, Moser MB, Moser EI. (2007). Pattern separation in the dentate gyrus and CA3 of the hippocampus. Science (New York, N.Y.). 315 [PubMed]

Leutgeb JK et al. (2005). Progressive transformation of hippocampal neuronal representations in "morphed" environments. Neuron. 48 [PubMed]

Leutgeb S, Leutgeb JK, Treves A, Moser MB, Moser EI. (2004). Distinct ensemble codes in hippocampal areas CA3 and CA1. Science (New York, N.Y.). 305 [PubMed]

Lynch G, Granger R, Coultrip R. (1992). A cortical model of winnertake-all competition via lateral inhibition Neural Networks. 5

Lynch M, Sayin U, Golarai G, Sutula T. (2000). NMDA receptor-dependent plasticity of granule cell spiking in the dentate gyrus of normal and epileptic rats. Journal of neurophysiology. 84 [PubMed]

Lübke J, Frotscher M, Spruston N. (1998). Specialized electrophysiological properties of anatomically identified neurons in the hilar region of the rat fascia dentata. Journal of neurophysiology. 79 [PubMed]

Marr D. (1971). Simple memory: a theory for archicortex. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 262 [PubMed]

Mathern GW, Babb TL, Vickrey BG, Melendez M, Pretorius JK. (1995). The clinical-pathogenic mechanisms of hippocampal neuron loss and surgical outcomes in temporal lobe epilepsy. Brain : a journal of neurology. 118 ( Pt 1) [PubMed]

Morris RG. (2006). Elements of a neurobiological theory of hippocampal function: the role of synaptic plasticity, synaptic tagging and schemas. The European journal of neuroscience. 23 [PubMed]

Motley SE, Kirwan CB. (2012). A parametric investigation of pattern separation processes in the medial temporal lobe. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Myers CE, Scharfman HE. (2009). A role for hilar cells in pattern separation in the dentate gyrus: a computational approach. Hippocampus. 19 [PubMed]

Myers CE, Scharfman HE. (2011). Pattern separation in the dentate gyrus: a role for the CA3 backprojection. Hippocampus. 21 [PubMed]

Nakashiba T et al. (2012). Young dentate granule cells mediate pattern separation, whereas old granule cells facilitate pattern completion. Cell. 149 [PubMed]

Neuhauser M. (2009). Nonparametric Statistical Tests: A Computational Approach.

Nitz D, McNaughton B. (2004). Differential modulation of CA1 and dentate gyrus interneurons during exploration of novel environments. Journal of neurophysiology. 91 [PubMed]

O'Reilly RC, McClelland JL. (1994). Hippocampal conjunctive encoding, storage, and recall: avoiding a trade-off. Hippocampus. 4 [PubMed]

Olshausen BA, Field DJ. (2004). Sparse coding of sensory inputs. Current opinion in neurobiology. 14 [PubMed]

Petrantonakis PC, Poirazi P. (2014). A compressed sensing perspective of hippocampal function. Frontiers in systems neuroscience. 8 [PubMed]

Petrantonakis PC, Poirazi P. (2015). Dentate Gyrus circuitry features improve performance of sparse approximation algorithms. PloS one. 10 [PubMed]

Ratzliff Ad, Howard AL, Santhakumar V, Osapay I, Soltesz I. (2004). Rapid deletion of mossy cells does not result in a hyperexcitable dentate gyrus: implications for epileptogenesis. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Ratzliff Ad, Santhakumar V, Howard A, Soltesz I. (2002). Mossy cells in epilepsy: rigor mortis or vigor mortis? Trends in neurosciences. 25 [PubMed]

Rolls ET. (2007). An attractor network in the hippocampus: theory and neurophysiology. Learning & memory (Cold Spring Harbor, N.Y.). 14 [PubMed]

Roth A, Van_rossum MCW. (2009). Modeling synapses Computational modeling methods for neuroscientists.

Santhakumar V, Aradi I, Soltesz I. (2005). Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. Journal of neurophysiology. 93 [PubMed]

Santoro A. (2013). Reassessing pattern separation in the dentate gyrus. Frontiers in behavioral neuroscience. 7 [PubMed]

Satvat E, Schmidt B, Argraves M, Marrone DF, Markus EJ. (2011). Changes in task demands alter the pattern of zif268 expression in the dentate gyrus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Scharfman HE, Amaral DG, Lavenex P. (2007). The dentate gyrus: Fundamental neuroanatomical organization (dentate gyrus for dummies) The Dentate Gyrus: A Comprehensive Guide to Structure, Function, and Clinical Implications. 163

Scheff SW, Price DA. (2003). Synaptic pathology in Alzheimer's disease: a review of ultrastructural studies. Neurobiology of aging. 24 [PubMed]

Schmidt-Hieber C, Bischofberger J. (2010). Fast sodium channel gating supports localized and efficient axonal action potential initiation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

Schmidt-Hieber C, Jonas P, Bischofberger J. (2007). Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Sik A, Penttonen M, Buzsáki G. (1997). Interneurons in the hippocampal dentate gyrus: an in vivo intracellular study. The European journal of neuroscience. 9 [PubMed]

Sloviter RS, Lømo T. (2012). Updating the lamellar hypothesis of hippocampal organization. Frontiers in neural circuits. 6 [PubMed]

Small SA, Chawla MK, Buonocore M, Rapp PR, Barnes CA. (2004). Imaging correlates of brain function in monkeys and rats isolates a hippocampal subregion differentially vulnerable to aging. Proceedings of the National Academy of Sciences of the United States of America. 101 [PubMed]

Squire LR, Stark CE, Clark RE. (2004). The medial temporal lobe. Annual review of neuroscience. 27 [PubMed]

Tejada J, Roque AC. (2014). Computational models of dentate gyrus with epilepsy-induced morphological alterations in granule cells. Epilepsy & behavior : E&B. 38 [PubMed]

Treves A, Rolls ET. (1994). Computational analysis of the role of the hippocampus in memory. Hippocampus. 4 [PubMed]

Treves A, Tashiro A, Witter MP, Moser EI. (2008). What is the mammalian dentate gyrus good for? Neuroscience. 154 [PubMed]

West MJ, Kawas CH, Martin LJ, Troncoso JC. (2000). The CA1 region of the human hippocampus is a hot spot in Alzheimer's disease. Annals of the New York Academy of Sciences. 908 [PubMed]

West MJ, Slomianka L, Gundersen HJ. (1991). Unbiased stereological estimation of the total number of neurons in thesubdivisions of the rat hippocampus using the optical fractionator. The Anatomical record. 231 [PubMed]

Yassa MA, Stark CE. (2011). Pattern separation in the hippocampus. Trends in neurosciences. 34 [PubMed]

Yim MY, Hanuschkin A, Wolfart J. (2015). Intrinsic rescaling of granule cells restores pattern separation ability of a dentate gyrus network model during epileptic hyperexcitability. Hippocampus. 25 [PubMed]

References and models that cite this paper

Danielson NB et al. (2017). In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. Neuron. 93 [PubMed]

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