On the structural connectivity of large-scale models of brain networks (Giacopelli et al 2021)

Barabasi AL, Albert R. (1999). Emergence of scaling in random networks Science (New York, N.Y.). 286 [PubMed]

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

• Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016) [Model]

Billeh YN et al. (2020). Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex. Neuron. 106 [PubMed]

• Systematic integration of data into multi-scale models of mouse primary V1 (Billeh et al 2020) [Model]

Bonifazi P et al. (2009). GABAergic hub neurons orchestrate synchrony in developing hippocampal networks. Science (New York, N.Y.). 326 [PubMed]

Brunel N. (2000). Dynamics of sparsely connected networks of excitatory and inhibitory spiking neurons. Journal of computational neuroscience. 8 [PubMed]

• Sparsely connected networks of spiking neurons (Brunel 2000) [Model]

Buzsáki G, Draguhn A. (2004). Neuronal oscillations in cortical networks. Science (New York, N.Y.). 304 [PubMed]

Dummer B, Wieland S, Lindner B. (2014). Self-consistent determination of the spike-train power spectrum in a neural network with sparse connectivity. Frontiers in computational neuroscience. 8 [PubMed]

Gong G et al. (2009). Mapping anatomical connectivity patterns of human cerebral cortex using in vivo diffusion tensor imaging tractography. Cerebral cortex (New York, N.Y. : 1991). 19 [PubMed]

Helmstaedter M et al. (2013). Connectomic reconstruction of the inner plexiform layer in the mouse retina. Nature. 500 [PubMed]

Hjorth JJJ et al. (2020). The microcircuits of striatum in silico. Proceedings of the National Academy of Sciences of the United States of America. 117 [PubMed]

• The microcircuits of striatum in silico (Hjorth et al 2020) [Model]

Izhikevich EM, Edelman GM. (2008). Large-scale model of mammalian thalamocortical systems. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Migliore M, Cavarretta F, Hines ML, Shepherd GM. (2014). Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Frontiers in computational neuroscience. 8 [PubMed]

• 3D model of the olfactory bulb (Migliore et al. 2014) [Model]

Newman ME. (2006). Modularity and community structure in networks. Proceedings of the National Academy of Sciences of the United States of America. 103 [PubMed]

Potjans TC, Diesmann M. (2014). The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cerebral cortex (New York, N.Y. : 1991). 24 [PubMed]

• A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]

Reimann MW, King JG, Muller EB, Ramaswamy S, Markram H. (2015). An algorithm to predict the connectome of neural microcircuits. Frontiers in computational neuroscience. 9 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Takemura SY et al. (2013). A visual motion detection circuit suggested by Drosophila connectomics. Nature. 500 [PubMed]

Varshney LR, Chen BL, Paniagua E, Hall DH, Chklovskii DB. (2011). Structural properties of the Caenorhabditis elegans neuronal network. PLoS computational biology. 7 [PubMed]

Watts DJ, Strogatz SH. (1998). Collective dynamics of 'small-world' networks. Nature. 393 [PubMed]

Gandolfi D et al. (2022). A realistic morpho-anatomical connection strategy for modelling full-scale point-neuron microcircuits Scientific reports. 12 [PubMed]

• Scaffold model of mouse CA1 hippocampus. (Gandolfi et al 2022) [Model]