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• PyRhO: A multiscale optogenetics simulation platform (Evans et al 2016) [Model]

Grossman N, Nikolic K, Toumazou C, Degenaar P. (2011). Modeling study of the light stimulation of a neuron cell with channelrhodopsin-2 mutants. IEEE transactions on bio-medical engineering. 58 [PubMed]

Grossman N et al. (2013). The spatial pattern of light determines the kinetics and modulates backpropagation of optogenetic action potentials. Journal of computational neuroscience. 34 [PubMed]

Stefanescu RA, Shivakeshavan RG, Khargonekar PP, Talathi SS. (2013). Computational modeling of channelrhodopsin-2 photocurrent characteristics in relation to neural signaling. Bulletin of mathematical biology. 75 [PubMed]

• Computational modelling of channelrhodopsin-2 photocurrent characteristics (Stefanescu et al. 2013) [Model]

Talathi SS, Carney PR, Khargonekar PP. (2011). Control of neural synchrony using channelrhodopsin-2: a computational study. Journal of computational neuroscience. 31 [PubMed]

• Wang-Buzsaki Interneuron (Talathi et al., 2010) [Model]

Williams JC et al. (2013). Computational optogenetics: empirically-derived voltage- and light-sensitive channelrhodopsin-2 model. PLoS computational biology. 9 [PubMed]

• Voltage and light-sensitive Channelrhodopsin-2 model (ChR2) (Williams et al. 2013) [Model]
• Voltage and light-sensitive Channelrhodopsin-2 model (ChR2-H134R) (Williams et al. 2013) (NEURON) [Model]