Neymotin SA et al. (2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural computation. 27 [PubMed]

See more from authors: Neymotin SA · McDougal RA · Sherif MA · Fall CP · Hines ML · Lytton WW

References and models cited by this paper

Allbritton NL, Meyer T, Stryer L. (1992). Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate. Science (New York, N.Y.). 258 [PubMed]

Berridge MJ. (1998). Neuronal calcium signaling. Neuron. 21 [PubMed]

Blackwell KT. (2013). Approaches and tools for modeling signaling pathways and calcium dynamics in neurons. Journal of neuroscience methods. 220 [PubMed]

Busa WB, Nuccitelli R. (1985). An elevated free cytosolic Ca2+ wave follows fertilization in eggs of the frog, Xenopus laevis. The Journal of cell biology. 100 [PubMed]

De Schutter E. (2008). Why are computational neuroscience and systems biology so separate? PLoS computational biology. 4 [PubMed]

De Schutter E, Smolen P. (1998). Calcium dynamics in large neuronal models Methods In Neuronal Modeling: From Ions To Networks.

De Young GW, Keizer J. (1992). A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration. Proceedings of the National Academy of Sciences of the United States of America. 89 [PubMed]

Fall CP, Rinzel J. (2006). An intracellular Ca2+ subsystem as a biologically plausible source of intrinsic conditional bistability in a network model of working memory. Journal of computational neuroscience. 20 [PubMed]

Fall CP, Wagner JM, Loew LM, Nuccitelli R. (2004). Cortically restricted production of IP3 leads to propagation of the fertilization Ca2+ wave along the cell surface in a model of the Xenopus egg. Journal of theoretical biology. 231 [PubMed]

Fitzpatrick JS et al. (2009). Inositol-1,4,5-trisphosphate receptor-mediated Ca2+ waves in pyramidal neuron dendrites propagate through hot spots and cold spots. The Journal of physiology. 587 [PubMed]

Fontanilla RA, Nuccitelli R. (1998). Characterization of the sperm-induced calcium wave in Xenopus eggs using confocal microscopy. Biophysical journal. 75 [PubMed]

Green KN, LaFerla FM. (2008). Linking calcium to Abeta and Alzheimer's disease. Neuron. 59 [PubMed]

Gunter TE, Yule DI, Gunter KK, Eliseev RA, Salter JD. (2004). Calcium and mitochondria. FEBS letters. 567 [PubMed]

Harris K. (1994). Dendritic Spines.

Hartsfield J. (). A quantitative study of neuronal calcium signaling Ph.D. diss., Baylor College of Medicine.

Hines M, Neymotin S, McDougal R, Lytton W . (2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. BMC Neuroscience. 15

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]

Hong M, Ross WN. (2007). Priming of intracellular calcium stores in rat CA1 pyramidal neurons. The Journal of physiology. 584 [PubMed]

Iftinca M et al. (2006). Temperature dependence of T-type calcium channel gating. Neuroscience. 142 [PubMed]

Kay AR, Wong RK. (1987). Calcium current activation kinetics in isolated pyramidal neurones of the Ca1 region of the mature guinea-pig hippocampus. The Journal of physiology. 392 [PubMed]

Kotaleski JH, Blackwell KT. (2010). Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches. Nature reviews. Neuroscience. 11 [PubMed]

Kretsinger RH. (1980). Structure and evolution of calcium-modulated proteins. CRC critical reviews in biochemistry. 8 [PubMed]

LaFerla FM. (2002). Calcium dyshomeostasis and intracellular signalling in Alzheimer's disease. Nature reviews. Neuroscience. 3 [PubMed]

Lechleiter J, Girard S, Peralta E, Clapham D. (1991). Spiral calcium wave propagation and annihilation in Xenopus laevis oocytes. Science (New York, N.Y.). 252 [PubMed]

Li YX, Rinzel J. (1994). Equations for InsP3 receptor-mediated [Ca2+]i oscillations derived from a detailed kinetic model: a Hodgkin-Huxley like formalism. Journal of theoretical biology. 166 [PubMed]

Lipton P. (1999). Ischemic cell death in brain neurons. Physiological reviews. 79 [PubMed]

Lytton WW, Neymotin SA, Kerr CC. (2014). Multiscale modeling for clinical translation in neuropsychiatric disease. Journal of computational surgery. 1 [PubMed]

Martone ME, Zhang Y, Simpliciano VM, Carragher BO, Ellisman MH. (1993). Three-dimensional visualization of the smooth endoplasmic reticulum in Purkinje cell dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 13 [PubMed]

McCormick DA, Huguenard JR. (1992). A model of the electrophysiological properties of thalamocortical relay neurons. Journal of neurophysiology. 68 [PubMed]

McDougal RA, Hines ML, Lytton WW. (2013). Water-tight membranes from neuronal morphology files. Journal of neuroscience methods. 220 [PubMed]

McDougal RA, Hines ML, Lytton WW. (2013). Reaction-diffusion in the NEURON simulator. Frontiers in neuroinformatics. 7 [PubMed]

Nakamura T, Barbara JG, Nakamura K, Ross WN. (1999). Synergistic release of Ca2+ from IP3-sensitive stores evoked by synaptic activation of mGluRs paired with backpropagating action potentials. Neuron. 24 [PubMed]

Neymotin SA et al. (2013). Ih tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PloS one. 8 [PubMed]

Orrenius S, Zhivotovsky B, Nicotera P. (2003). Regulation of cell death: the calcium-apoptosis link. Nature reviews. Molecular cell biology. 4 [PubMed]

Peercy BE. (2008). Initiation and propagation of a neuronal intracellular calcium wave. Journal of computational neuroscience. 25 [PubMed]

Peterson BE, Healy MD, Nadkarni PM, Miller PL, Shepherd GM. (1996). ModelDB: an environment for running and storing computational models and their results applied to neuroscience. Journal of the American Medical Informatics Association : JAMIA. 3 [PubMed]

Pozzo-Miller LD et al. (1997). Activity-dependent calcium sequestration in dendrites of hippocampal neurons in brain slices. The Journal of neuroscience : the official journal of the Society for Neuroscience. 17 [PubMed]

Ross WN, Nakamura T, Watanabe S, Larkum M, Lasser-Ross N. (2005). Synaptically activated ca2+ release from internal stores in CNS neurons. Cellular and molecular neurobiology. 25 [PubMed]

Rowan MS, Neymotin SA. (2013). Synaptic Scaling Balances Learning in a Spiking Model of Neocortex Adaptive and Natural Computing Algorithms. 7824

Rowan MS, Neymotin SA, Lytton WW. (2014). Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Frontiers in computational neuroscience. 8 [PubMed]

Safiulina VF et al. (2010). Control of GABA Release at Mossy Fiber-CA3 Connections in the Developing Hippocampus. Frontiers in synaptic neuroscience. 2 [PubMed]

Shemer I, Brinne B, Tegnér J, Grillner S. (2008). Electrotonic signals along intracellular membranes may interconnect dendritic spines and nucleus. PLoS computational biology. 4 [PubMed]

Spacek J, Harris KM. (1997). Three-dimensional organization of smooth endoplasmic reticulum in hippocampal CA1 dendrites and dendritic spines of the immature and mature rat. The Journal of neuroscience : the official journal of the Society for Neuroscience. 17 [PubMed]

Stern MD. (1992). Buffering of calcium in the vicinity of a channel pore. Cell calcium. 13 [PubMed]

Storm JF. (1987). Intracellular injection of a Ca2+ chelator inhibits spike repolarization in hippocampal neurons. Brain research. 435 [PubMed]

Stutzmann GE. (2005). Calcium dysregulation, IP3 signaling, and Alzheimer's disease. The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 11 [PubMed]

Taxin ZH, Neymotin SA, Mohan A, Lipton P, Lytton WW. (2014). Modeling molecular pathways of neuronal ischemia. Progress in molecular biology and translational science. 123 [PubMed]

Taylor CW, Tovey SC. (2010). IP(3) receptors: toward understanding their activation. Cold Spring Harbor perspectives in biology. 2 [PubMed]

Terasaki M, Slater NT, Fein A, Schmidek A, Reese TS. (1994). Continuous network of endoplasmic reticulum in cerebellar Purkinje neurons. Proceedings of the National Academy of Sciences of the United States of America. 91 [PubMed]

Thibault O et al. (1998). Calcium dysregulation in neuronal aging and Alzheimer's disease: history and new directions. Cell calcium. 24 [PubMed]

Wagner J et al. (2004). A wave of IP3 production accompanies the fertilization Ca2+ wave in the egg of the frog, Xenopus laevis: theoretical and experimental support. Cell calcium. 35 [PubMed]

West AE et al. (2001). Calcium regulation of neuronal gene expression. Proceedings of the National Academy of Sciences of the United States of America. 98 [PubMed]

Winograd M, Destexhe A, Sanchez-Vives MV. (2008). Hyperpolarization-activated graded persistent activity in the prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

Zündorf G, Reiser G. (2011). Calcium dysregulation and homeostasis of neural calcium in the molecular mechanisms of neurodegenerative diseases provide multiple targets for neuroprotection. Antioxidants & redox signaling. 14 [PubMed]

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