Allbritton NL, Meyer T, Stryer L. (1992). Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate. Science (New York, N.Y.). 258 [PubMed]
Atri A, Amundson J, Clapham D, Sneyd J. (1993). A single-pool model for intracellular calcium oscillations and waves in the Xenopus laevis oocyte. Biophysical journal. 65 [PubMed]
Bezprozvanny I, Watras J, Ehrlich BE. (1991). Bell-shaped calcium-response curves of Ins(1,4,5)P3- and calcium-gated channels from endoplasmic reticulum of cerebellum. Nature. 351 [PubMed]
Bray D. (1997). Reductionism for biochemists: how to survive the protein jungle. Trends in biochemical sciences. 22 [PubMed]
Coggan JS, Thompson SH. (1995). Intracellular calcium signals in response to bradykinin in individual neuroblastoma cells. The American journal of physiology. 269 [PubMed]
Coggan JS, Thompson SH. (1997). Cholinergic modulation of the Ca2+ response to bradykinin in neuroblastoma cells. The American journal of physiology. 273 [PubMed]
De Young GW, Keizer J. (1992). A single-pool inositol 1,4,5-trisphosphate-receptor-based model for agonist-stimulated oscillations in Ca2+ concentration. Proceedings of the National Academy of Sciences of the United States of America. 89 [PubMed]
Eberhard M, Erne P. (1991). Calcium binding to fluorescent calcium indicators: calcium green, calcium orange and calcium crimson. Biochemical and biophysical research communications. 180 [PubMed]
Farooqui AA et al. (1990). Stimulation of mono- and diacylglycerol lipase activities by bradykinin in neural cultures. Biochemical and biophysical research communications. 166 [PubMed]
Fink C, Morgan F, Loew LM. (1998). Intracellular fluorescent probe concentrations by confocal microscopy. Biophysical journal. 75 [PubMed]
Fink CC, Slepchenko B, Loew LM. (1999). Determination of time-dependent inositol-1,4,5-trisphosphate concentrations during calcium release in a smooth muscle cell. Biophysical journal. 77 [PubMed]
Fink CC et al. (1999). Morphological control of inositol-1,4,5-trisphosphate-dependent signals. The Journal of cell biology. 147 [PubMed]
Gill DL, Chueh SH. (1985). An intracellular (ATP + Mg2+)-dependent calcium pump within the N1E-115 neuronal cell line. The Journal of biological chemistry. 260 [PubMed]
Glanville NT, Byers DM, Cook HW, Spence MW, Palmer FB. (1989). Differences in the metabolism of inositol and phosphoinositides by cultured cells of neuronal and glial origin. Biochimica et biophysica acta. 1004 [PubMed]
Grynkiewicz G, Poenie M, Tsien RY. (1985). A new generation of Ca2+ indicators with greatly improved fluorescence properties. The Journal of biological chemistry. 260 [PubMed]
Herrington J, Park YB, Babcock DF, Hille B. (1996). Dominant role of mitochondria in clearance of large Ca2+ loads from rat adrenal chromaffin cells. Neuron. 16 [PubMed]
Higashida H, Brown DA. (1987). Bradykinin inhibits potassium (M) currents in N1E-115 neuroblastoma cells. Responses resemble those in NG108-15 neuroblastoma x glioma hybrid cells. FEBS letters. 220 [PubMed]
Hirose K, Kadowaki S, Tanabe M, Takeshima H, Iino M. (1999). Spatiotemporal dynamics of inositol 1,4,5-trisphosphate that underlies complex Ca2+ mobilization patterns. Science (New York, N.Y.). 284 [PubMed]
Iredale PA, Martin KF, Hill SJ, Kendall DA. (1992). Agonist-induced changes in [Ca2+]i in N1E-115 cells: differential effects of bradykinin and carbachol. European journal of pharmacology. 226 [PubMed]
Jaffe LF. (1993). Classes and mechanisms of calcium waves. Cell calcium. 14 [PubMed]
Jafri MS. (1995). A theoretical study of cytosolic calcium waves in Xenopus oocytes. Journal of theoretical biology. 172 [PubMed]
Jafri MS, Keizer J. (1995). On the roles of Ca2+ diffusion, Ca2+ buffers, and the endoplasmic reticulum in IP3-induced Ca2+ waves. Biophysical journal. 69 [PubMed]
Keizer J, De Young GW. (1992). Two roles of Ca2+ in agonist stimulated Ca2+ oscillations. Biophysical journal. 61 [PubMed]
Keizer J, Levine L. (1996). Ryanodine receptor adaptation and Ca2+(-)induced Ca2+ release-dependent Ca2+ oscillations. Biophysical journal. 71 [PubMed]
Khodakhah K, Ogden D. (1993). Functional heterogeneity of calcium release by inositol trisphosphate in single Purkinje neurones, cultured cerebellar astrocytes, and peripheral tissues. Proceedings of the National Academy of Sciences of the United States of America. 90 [PubMed]
Klingauf J, Neher E. (1997). Modeling buffered Ca2+ diffusion near the membrane: implications for secretion in neuroendocrine cells. Biophysical journal. 72 [PubMed]
Kupferman R, Mitra PP, Hohenberg PC, Wang SS. (1997). Analytical calculation of intracellular calcium wave characteristics. Biophysical journal. 72 [PubMed]
Li W, Llopis J, Whitney M, Zlokarnik G, Tsien RY. (1998). Cell-permeant caged InsP3 ester shows that Ca2+ spike frequency can optimize gene expression. Nature. 392 [PubMed]
Li YX, Rinzel J. (1994). Equations for InsP3 receptor-mediated [Ca2+]i oscillations derived from a detailed kinetic model: a Hodgkin-Huxley like formalism. Journal of theoretical biology. 166 [PubMed]
Loew LM, Schaff JC, Slepchenko BM. (1999). Physiological modeling with the Virtual Cell framework Methods in Enzymology.
Luzzi V, Sims CE, Soughayer JS, Allbritton NL. (1998). The physiologic concentration of inositol 1,4,5-trisphosphate in the oocytes of Xenopus laevis. The Journal of biological chemistry. 273 [PubMed]
Lytton J, Westlin M, Burk SE, Shull GE, MacLennan DH. (1992). Functional comparisons between isoforms of the sarcoplasmic or endoplasmic reticulum family of calcium pumps. The Journal of biological chemistry. 267 [PubMed]
Mak DO, McBride S, Foskett JK. (1998). Inositol 1,4,5-trisphosphate [correction of tris-phosphate] activation of inositol trisphosphate [correction of tris-phosphate] receptor Ca2+ channel by ligand tuning of Ca2+ inhibition. Proceedings of the National Academy of Sciences of the United States of America. 95 [PubMed]
Meldolesi J, Pozzan T. (1998). The endoplasmic reticulum Ca2+ store: a view from the lumen. Trends in biochemical sciences. 23 [PubMed]
Miyawaki A et al. (1997). Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin. Nature. 388 [PubMed]
Monck JR, Williamson RE, Rogulja I, Fluharty SJ, Williamson JR. (1990). Angiotensin II effects on the cytosolic free Ca2+ concentration in N1E-115 neuroblastoma cells: kinetic properties of the Ca2+ transient measured in single fura-2-loaded cells. Journal of neurochemistry. 54 [PubMed]
Patankar SV. (1980). Numerical Heat Transfer and Fluid Flow.
Press WH, Teukolsky SA, Flannery BP, Vellerling WT. (1992). Numerical Recipes In C: The Art Of Scientific Computing.
Roth BJ, Yagodin SV, Holtzclaw L, Russell JT. (1995). A mathematical model of agonist-induced propagation of calcium waves in astrocytes. Cell calcium. 17 [PubMed]
Schaff J, Fink CC, Slepchenko B, Carson JH, Loew LM. (1997). A general computational framework for modeling cellular structure and function. Biophysical journal. 73 [PubMed]
Schaff JC, Slepchenko BM, Choi YS. (2000). Numerical approach to fast reactions in reaction-diffusion systems: application to buffered calcium waves in bistable models J. Comput. Phys.. 162(1)
Sneyd J, Keizer J, Sanderson MJ. (1995). Mechanisms of calcium oscillations and waves: a quantitative analysis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 9 [PubMed]
Snider RM, Richelson E. (1984). Bradykinin receptor-mediated cyclic GMP formation in a nerve cell population (murine neuroblastoma clone N1E-115). Journal of neurochemistry. 43 [PubMed]
Tang Y, Othmer HG. (1994). A model of calcium dynamics in cardiac myocytes based on the kinetics of ryanodine-sensitive calcium channels. Biophysical journal. 67 [PubMed]
Terasaki M, Jaffe LA. (1991). Organization of the sea urchin egg endoplasmic reticulum and its reorganization at fertilization. The Journal of cell biology. 114 [PubMed]
Ueda T, Chueh SH, Noel MW, Gill DL. (1986). Influence of inositol 1,4,5-trisphosphate and guanine nucleotides on intracellular calcium release within the N1E-115 neuronal cell line. The Journal of biological chemistry. 261 [PubMed]
Wagner J, Keizer J. (1994). Effects of rapid buffers on Ca2+ diffusion and Ca2+ oscillations. Biophysical journal. 67 [PubMed]
Wang SS, Alousi AA, Thompson SH. (1995). The lifetime of inositol 1,4,5-trisphosphate in single cells. The Journal of general physiology. 105 [PubMed]
Wang SS, Thompson SH. (1995). Local positive feedback by calcium in the propagation of intracellular calcium waves. Biophysical journal. 69 [PubMed]
Watras J, Moraru II, Benevolensky D. (1994). Micromolar calcium decreases affinity of inositol trisphosphate receptor in vascular smooth muscle. Biochem J. 299 ( Pt 3)
Xu T, Naraghi M, Kang H, Neher E. (1997). Kinetic studies of Ca2+ binding and Ca2+ clearance in the cytosol of adrenal chromaffin cells. Biophysical journal. 73 [PubMed]
Xu X, Zeng W, Diaz J, Muallem S. (1996). Spacial compartmentalization of Ca2+ signaling complexes in pancreatic acini. The Journal of biological chemistry. 271 [PubMed]
Ashhad S, Narayanan R. (2013). Quantitative interactions between the A-type K+ current and inositol trisphosphate receptors regulate intraneuronal Ca2+ waves and synaptic plasticity. The Journal of physiology. 591 [PubMed]
Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]
Inoue M, lin H, Imanaga I, Ogawa K, Warashina A. (2004). InsP3 receptor type 2 and oscillatory and monophasic Ca2+ transients in rat adrenal chromaffin cells. Cell calcium. 35 [PubMed]
Mandge D, Manchanda R. (2018). A biophysically detailed computational model of urinary bladder small DRG neuron soma. PLoS computational biology. 14 [PubMed]
Mukunda CL, Narayanan R. (2017). Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. The Journal of physiology. 595 [PubMed]
Savtchenko LP et al. (2018). Disentangling astroglial physiology with a realistic cell model in silico. Nature communications. 9 [PubMed]