Bell M, Bartol T, Sejnowski T, Rangamani P. (2019). Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. The Journal of general physiology. 151 [PubMed]

• Dendritic spine geometry, spine apparatus organization: spatiotemporal Ca dynamics (Bell et al 2019) [Model]

Kim M et al. (2011). Colocalization of protein kinase A with adenylyl cyclase enhances protein kinase A activity during induction of long-lasting long-term-potentiation. PLoS computational biology. 7 [PubMed]

• Hippocampus CA1: Simulations of LTP signaling pathways (Kim M et al. 2011) [Model]

McDougal RA, Hines ML, Lytton WW. (2013). Water-tight membranes from neuronal morphology files. Journal of neuroscience methods. 220 [PubMed]

• Constructed Tessellated Neuronal Geometries (CTNG) (McDougal et al. 2013) [Model]

Nicholson DA et al. (2006). Distance-dependent differences in synapse number and AMPA receptor expression in hippocampal CA1 pyramidal neurons. Neuron. 50 [PubMed]

O'Donnell C, Nolan MF, van Rossum MC. (2011). Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) [Model]

Oliveira RF, Kim M, Blackwell KT. (2012). Subcellular location of PKA controls striatal plasticity: stochastic simulations in spiny dendrites. PLoS computational biology. 8 [PubMed]

• Dopamine activation of signaling pathways in a medium spiny projection neuron (Oliveira et al. 2012) [Model]