The virtual slice setup (Lytton et al. 2008)

Efroni S, Harel D, Cohen IR. (2005). Reactive animation: Realistic modeling of complex dynamic systems Computer. 38

Efroni S, Harel D, Cohen IR. (2007). Emergent dynamics of thymocyte development and lineage determination. PLoS computational biology. 3 [PubMed]

Hereld M, Stevens RL, Lee HC, van Drongelen W. (2007). Framework for interactive million-neuron simulation. Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society. 24 [PubMed]

Hines ML, Carnevale NT. (2004). Discrete event simulation in the NEURON environment. Neurocomputing. 58-60

• Discrete event simulation in the NEURON environment (Hines and Carnevale 2004) [Model]

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hines ML, Lytton WW, Stewart M. (2008). Simulation of large networks: technique and progress Computational Neuroscience in Epilepsy. 1

Lytton WW. (2006). Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics. 4 [PubMed]

• Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006) [Model]

Lytton WW, Hines M. (2004). Hybrid neural networks--combining abstract and realistic neural units. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 2004 [PubMed]

Lytton WW, Omurtag A. (2007). Tonic-clonic transitions in computer simulation. Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society. 24 [PubMed]

• Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) [Model]

Lytton WW, Omurtag A, Neymotin SA, Hines ML. (2008). Just-in-time connectivity for large spiking networks. Neural computation. 20 [PubMed]

• JitCon: Just in time connectivity for large spiking networks (Lytton et al. 2008) [Model]

Lytton WW, Stewart M. (2005). A rule-based firing model for neural networks Int J Bioelectromagn. 7

Lytton WW, Stewart M. (2006). Rule-based firing for network simulations. Neurocomputing. 69

Lytton WW, Stewart M. (2007). Data mining through simulation. Methods in molecular biology (Clifton, N.J.). 401 [PubMed]

Markram H. (2006). The blue brain project. Nature reviews. Neuroscience. 7 [PubMed]

Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. (2006). Parallel network simulations with NEURON. Journal of computational neuroscience. 21 [PubMed]

• Parallel network simulations with NEURON (Migliore et al 2006) [Model]

ModelD ModelDB. (2007). http:--senselab.med.yale.edu-senselab-ModelDB .

Rowat PF, Selverston AI. (1993). Modeling the gastric mill central pattern generator of the lobster with a relaxation-oscillator network. Journal of neurophysiology. 70 [PubMed]

Web_site_neuron . (2007). http:--www.neuron.yale.edu .

Chadderdon GL et al. (2014). Motor cortex microcircuit simulation based on brain activity mapping. Neural computation. 26 [PubMed]

• Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014) [Model]

Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW. (2012). Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex. PloS one. 7 [PubMed]

• Reinforcement learning of targeted movement (Chadderdon et al. 2012) [Model]

Dura-Bernal S et al. (2016). Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm. Frontiers in neuroscience. 10 [PubMed]

• Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015) [Model]

Dura-Bernal S et al. (2015). Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Frontiers in neurorobotics. 9 [PubMed]

• Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015) [Model]

Kerr CC et al. (2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society. 20 [PubMed]

• Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012) [Model]

Kerr CC et al. (2013). Cortical information flow in Parkinson's disease: a composite network/field model. Frontiers in computational neuroscience. 7 [PubMed]

• Composite spiking network/neural field model of Parkinsons (Kerr et al 2013) [Model]

Lytton WW, Neymotin SA, Wester JC, Contreras D. (2011). Neocortical simulation for epilepsy surgery guidance: Localization and intervention Computational Surgery and Dual Training.

• Computational Surgery (Lytton et al. 2011) [Model]

Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural computation. 28 [PubMed]

• Parallelizing large networks in NEURON (Lytton et al. 2016) [Model]

Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW. (2013). Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural computation. 25 [PubMed]

• Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013) [Model]

Neymotin SA, Jacobs KM, Fenton AA, Lytton WW. (2011). Synaptic information transfer in computer models of neocortical columns. Journal of computational neuroscience. 30 [PubMed]

• Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010) [Model]

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW. (2011). Emergence of physiological oscillation frequencies in a computer model of neocortex. Frontiers in computational neuroscience. 5 [PubMed]

• Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) [Model]