Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013)


Mäki-Marttunen T, Aćimović J, Ruohonen K, Linne ML. (2013). Structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework. PloS one. 8 [PubMed]

See more from authors: Mäki-Marttunen T · Aćimović J · Ruohonen K · Linne ML

References and models cited by this paper

Aertsen A, Rotter S, Kumar A, Cardanobile S. (2011). Structure, dynamics and function of brains: Exploring relations and constraints Special issue in Frontiers in Computational Neuroscience.

Aćimović J, Mäki-Marttunen T, Havela R, Teppola H, Linne ML. (2011). Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D. EURASIP journal on bioinformatics & systems biology. 2011 [PubMed]

Baltz T, Herzog A, Voigt T. (2011). Slow oscillating population activity in developing cortical networks: models and experimental results. Journal of neurophysiology. 106 [PubMed]

Barabasi AL, Albert R. (1999). Emergence of scaling in random networks Science (New York, N.Y.). 286 [PubMed]

Beggs JM, Plenz D. (2003). Neuronal avalanches in neocortical circuits. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Benayoun M, Cowan JD, van Drongelen W, Wallace E. (2010). Avalanches in a stochastic model of spiking neurons. PLoS computational biology. 6 [PubMed]

Bollobas B, Borgs C, Chayes J, Riordan O. (2003). Directed scale-free graphs Proceedings of the Fourteenth Annual ACM-SIAM Symposium on Discrete Algorithms. 14

Brunel N, Hakim V. (1999). Fast global oscillations in networks of integrate-and-fire neurons with low firing rates. Neural computation. 11 [PubMed]

Buzsáki G, Leung LW, Vanderwolf CH. (1983). Cellular bases of hippocampal EEG in the behaving rat. Brain research. 287 [PubMed]

Cardanobile S, Pernice V, Deger M, Rotter S. (2012). Inferring general relations between network characteristics from specific network ensembles. PloS one. 7 [PubMed]

Chavez M, Hwang DU, Boccaletti S, Latora V, Moreno Y. (2006). Complex networks: structure and dynamics Phys Rep. 424

Chiappalone M, Bove M, Vato A, Tedesco M, Martinoia S. (2006). Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development. Brain research. 1093 [PubMed]

Chiu C, Weliky M. (2001). Spontaneous activity in developing ferret visual cortex in vivo. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]

Chrobak JJ, Buzsáki G. (1996). High-frequency oscillations in the output networks of the hippocampal-entorhinal axis of the freely behaving rat. The Journal of neuroscience : the official journal of the Society for Neuroscience. 16 [PubMed]

Crick F, Koch C. (1998). Constraints on cortical and thalamic projections: the no-strong-loops hypothesis. Nature. 391 [PubMed]

Diesmann M, Gewaltig M-O. (2007). NEST (Neural Simulation Tool) Scholarpedia. 2

Eguíluz VM, Chialvo DR, Cecchi GA, Baliki M, Apkarian AV. (2005). Scale-free brain functional networks. Physical review letters. 94 [PubMed]

Fukai T, Cateau H, Kitano K. (2002). Sustained activity with low firing rate in a recurrent network regulated by spike-timing-dependent plasticity Neurocomputing. 44

Gaiteri C, Rubin JE. (2011). The interaction of intrinsic dynamics and network topology in determining network burst synchrony. Frontiers in computational neuroscience. 5 [PubMed]

Golomb D, Amitai Y. (1997). Propagating neuronal discharges in neocortical slices: computational and experimental study. Journal of neurophysiology. 78 [PubMed]

Golomb D, Hansel D. (2000). The number of synaptic inputs and the synchrony of large, sparse neuronal networks. Neural computation. 12 [PubMed]

Golomb D, Shedmi A, Curtu R, Ermentrout GB. (2006). Persistent synchronized bursting activity in cortical tissues with low magnesium concentration: a modeling study. Journal of neurophysiology. 95 [PubMed]

Gritsun TA, Le Feber J, Stegenga J, Rutten WL. (2010). Network bursts in cortical cultures are best simulated using pacemaker neurons and adaptive synapses. Biological cybernetics. 102 [PubMed]

Guo D, Li C. (2009). Stochastic and coherence resonance in feed-forward-loop neuronal network motifs. Physical review. E, Statistical, nonlinear, and soft matter physics. 79 [PubMed]

Han J, Kamber M. (2006). Data mining: Concepts and techniques.

Helmstaedter M, Briggman KL, Denk W. (2011). High-accuracy neurite reconstruction for high-throughput neuroanatomy. Nature neuroscience. 14 [PubMed]

Hilgetag CC, Burns GA, O'Neill MA, Scannell JW, Young MP. (2000). Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 355 [PubMed]

Jia LC, Sano M, Lai PY, Chan CK. (2004). Connectivities and synchronous firing in cortical neuronal networks. Physical review letters. 93 [PubMed]

Kaiser M. (2011). A tutorial in connectome analysis: topological and spatial features of brain networks. NeuroImage. 57 [PubMed]

Keefer EW, Gramowski A, Gross GW. (2001). NMDA receptor-dependent periodic oscillations in cultured spinal cord networks. Journal of neurophysiology. 86 [PubMed]

Kim BJ. (2004). Performance of networks of artificial neurons: the role of clustering. Physical review. E, Statistical, nonlinear, and soft matter physics. 69 [PubMed]

Klivenyi P et al. (2000). Mice deficient in cellular glutathione peroxidase show increased vulnerability to malonate, 3-nitropropionic acid, and 1-methyl-4-phenyl-1,2,5,6-tetrahydropyridine. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

Koene RA et al. (2009). NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7 [PubMed]

Kuramoto Y. (1984). Chemical oscillations, waves, and turbulence.

Lago-Fernández LF, Huerta R, Corbacho F, Sigüenza JA. (2000). Fast response and temporal coherent oscillations in small-world networks. Physical review letters. 84 [PubMed]

Legrand JC, Darbon P, Streit J. (2004). Contributions of NMDA receptors to network recruitment and rhythm generation in spinal cord cultures. The European journal of neuroscience. 19 [PubMed]

Levy N, Horn D, Meilijson I, Ruppin E. (2001). Distributed synchrony in a cell assembly of spiking neurons. Neural networks : the official journal of the International Neural Network Society. 14 [PubMed]

Lisman JE. (1997). Bursts as a unit of neural information: making unreliable synapses reliable. Trends in neurosciences. 20 [PubMed]

Lorente de No R. (1933). Vestibulo-ocular reflex arc Arch Neurol Psych. 30

Maccluer C. (2000). The many proofs and applications of Perron`s theorem Siam Review. 42

Maheswaranathan N, Ferrari S, Vandongen AM, Henriquez CS. (2012). Emergent bursting and synchrony in computer simulations of neuronal cultures. Frontiers in computational neuroscience. 6 [PubMed]

Marconi E et al. (2012). Emergent functional properties of neuronal networks with controlled topology. PloS one. 7 [PubMed]

Marom S, Shahaf G. (2002). Development, learning and memory in large random networks of cortical neurons: lessons beyond anatomy. Quarterly reviews of biophysics. 35 [PubMed]

Masuda N, Aihara K. (2004). Global and local synchrony of coupled neurons in small-world networks. Biological cybernetics. 90 [PubMed]

Meunier D, Lambiotte R, Bullmore ET. (2010). Modular and hierarchically modular organization of brain networks. Frontiers in neuroscience. 4 [PubMed]

Milo R et al. (2002). Network motifs: simple building blocks of complex networks. Science (New York, N.Y.). 298 [PubMed]

Morelli LG, Abramson G, Kuperman MN. (2004). Associative memory on a small-world neural network Eur Phys J. 38

Moreno Y, Gomez-gardenes J. (2007). Synchronization of networks with variable local properties International Journal Of Bifurcation And Chaos. 17

Mäki-Marttunen T et al. (2011). Information diversity in structure and dynamics of simulated neuronal networks. Frontiers in computational neuroscience. 5 [PubMed]

Netoff TI, Clewley R, Arno S, Keck T, White JA. (2004). Epilepsy in small-world networks. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Newman MEJ. (2003). The structure and function of complex networks SIAM Review. 45

Ott E, Hunt B, Restrepo J. (2006). Emergence of synchronization in complex networks of interacting dynamical systems Nonlinear Phenomena. 224

Percha B, Dzakpasu R, Zochowski M, Parent J. (2005). Transition from local to global phase synchrony in small world neural network and its possible implications for epilepsy. Physical review. E, Statistical, nonlinear, and soft matter physics. 72 [PubMed]

Pérez T et al. (2011). Effect of the topology and delayed interactions in neuronal networks synchronization. PloS one. 6 [PubMed]

Restrepo JG, Ott E, Hunt BR. (2007). Approximating the largest eigenvalue of network adjacency matrices. Physical review. E, Statistical, nonlinear, and soft matter physics. 76 [PubMed]

Robinson HP et al. (1993). Periodic synchronized bursting and intracellular calcium transients elicited by low magnesium in cultured cortical neurons. Journal of neurophysiology. 70 [PubMed]

Roxin A. (2011). The role of degree distribution in shaping the dynamics in networks of sparsely connected spiking neurons. Frontiers in computational neuroscience. 5 [PubMed]

Roxin A, Riecke H, Solla SA. (2004). Self-sustained activity in a small-world network of excitable neurons. Physical review letters. 92 [PubMed]

Shanahan M. (2008). Dynamical complexity in small-world networks of spiking neurons. Physical review. E, Statistical, nonlinear, and soft matter physics. 78 [PubMed]

Shefi O, Golding I, Segev R, Ben-Jacob E, Ayali A. (2002). Morphological characterization of in vitro neuronal networks. Physical review. E, Statistical, nonlinear, and soft matter physics. 66 [PubMed]

Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB. (2005). Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS biology. 3 [PubMed]

Sporns O. (2011). The non-random brain: efficiency, economy, and complex dynamics. Frontiers in computational neuroscience. 5 [PubMed]

Stetter O, Battaglia D, Soriano J, Geisel T. (2012). Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals. PLoS computational biology. 8 [PubMed]

Takahashi YK, Kori H, Masuda N. (2009). Self-organization of feed-forward structure and entrainment in excitatory neural networks with spike-timing-dependent plasticity. Physical review. E, Statistical, nonlinear, and soft matter physics. 79 [PubMed]

Tsodyks M, Uziel A, Markram H. (2000). Synchrony generation in recurrent networks with frequency-dependent synapses. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

Vlachos I, Aertsen A, Kumar A. (2012). Beyond statistical significance: implications of network structure on neuronal activity. PLoS computational biology. 8 [PubMed]

Wagenaar DA, Pine J, Potter SM. (2006). An extremely rich repertoire of bursting patterns during the development of cortical cultures. BMC neuroscience. 7 [PubMed]

Wang XJ. (2001). Synaptic reverberation underlying mnemonic persistent activity. Trends in neurosciences. 24 [PubMed]

Wang XJ, Buzsáki G. (1996). Gamma oscillation by synaptic inhibition in a hippocampal interneuronal network model. The Journal of neuroscience : the official journal of the Society for Neuroscience. 16 [PubMed]

Watanabe S, Jimbo Y, Kamioka H, Kirino Y, Kawana A. (1996). Development of low magnesium-induced spontaneous synchronized bursting and GABAergic modulation in cultured rat neocortical neurons. Neuroscience letters. 210 [PubMed]

Watts DJ, Strogatz SH. (1998). Collective dynamics of 'small-world' networks. Nature. 393 [PubMed]

Wheeler BC, Brewer GJ. (2010). Designing Neural Networks in Culture: Experiments are described for controlled growth, of nerve cells taken from rats, in predesigned geometrical patterns on laboratory culture dishes. Proceedings of the IEEE. Institute of Electrical and Electronics Engineers. 98 [PubMed]

Yoshimura Y, Dantzker JL, Callaway EM. (2005). Excitatory cortical neurons form fine-scale functional networks. Nature. 433 [PubMed]

Zhao L, Beverlin B, Netoff T, Nykamp DQ. (2011). Synchronization from second order network connectivity statistics. Frontiers in computational neuroscience. 5 [PubMed]

Zhou C, Diaz-Guilera A, Arenas A, Kurths J, Moreno Y. (2008). Synchronization in complex networks Physics Reports. 469

van Vreeswijk C, Sompolinsky H. (1996). Chaos in neuronal networks with balanced excitatory and inhibitory activity. Science (New York, N.Y.). 274 [PubMed]

References and models that cite this paper

Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]

This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.