Belic JJ, Kumar A, Hellgren Kotaleski J. (2017). Interactions in the Striatal Network with Different Oscillation Frequencies *Artificial Neural Networks and Machine Learning -- ICANN 2017*.

Brette R, Goodman DF. (2011). Vectorized algorithms for spiking neural network simulation. *Neural computation*. 23 [PubMed]

Cattani A, Solinas S, Canuto C. (2016). A Hybrid Model for the Computationally-Efficient Simulation of the Cerebellar Granular Layer. *Frontiers in computational neuroscience*. 10 [PubMed]

Chrysanthidis N, Fiebig F, Lansner A. (2019). Introducing double bouquet cells into a modular cortical associative memory model *Journal of Computational Neuroscience*.

Crone JC et al. (2019). Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator *Frontiers in Neuroinformatics*. 13

- Large scale neocortical model for PGENESIS (Crone et al 2019) [Model]
- ACnet23 primary auditory cortex model (Beeman et al 2019) [Model]

Djurfeldt M. (2012). The connection-set algebra--a novel formalism for the representation of connectivity structure in neuronal network models. *Neuroinformatics*. 10 [PubMed]

Fiebig F, Lansner A. (2017). A Spiking Working Memory Model Based on Hebbian Short-Term Potentiation. *The Journal of neuroscience : the official journal of the Society for Neuroscience*. 37 [PubMed]

Gewaltig MO, Cannon R. (2014). Current practice in software development for computational neuroscience and how to improve it. *PLoS computational biology*. 10 [PubMed]

Gleeson P et al. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. *PLoS computational biology*. 6 [PubMed]

Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G. (2014). 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. *Frontiers in neuroinformatics*. 8 [PubMed]

Hernández OE, Zurek EE. (2013). Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON's programming language hoc. *BMC medical education*. 13 [PubMed]

Hines M, Kumar S, Schürmann F. (2011). Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. *Frontiers in computational neuroscience*. 5 [PubMed]

Jones A, Singh N, Huyck CR, Gandhi V. (2016). Neuron-Based Control Mechanisms for a Robotic Arm and Hand *ICMRRS 2017: International Conference on Medical Robotics and Robotics for Surgery, Paris, France*. 3(2)

Kobayashi R et al. (2019). Reconstructing neuronal circuitry from parallel spike trains. *Nature communications*. 10 [PubMed]

Kobayashi R, Tsubo Y, Shinomoto S. (2009). Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. *Frontiers in computational neuroscience*. 3 [PubMed]

- Multi-timescale adaptive threshold model (Kobayashi et al 2009) (NEURON) [Model]
- Multi-timescale adaptive threshold model (Kobayashi et al 2009) [Model]

Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. *Neural computation*. 28 [PubMed]

Magalhães BRC, Sterling T, Hines M, Schürmann F. (2019). Asynchronous Branch-Parallel Simulation of Detailed Neuron Models. *Frontiers in neuroinformatics*. 13 [PubMed]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. *Frontiers in computational neuroscience*. 4 [PubMed]

Martínez-Cañada P et al. (2018). Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells. *PLoS computational biology*. 14 [PubMed]

Martínez-Cañada P, Morillas C, Pino B, Ros E, Pelayo F. (2016). A Computational Framework for Realistic Retina Modeling. *International journal of neural systems*. 26 [PubMed]

Mattioni M, Cohen U, Le Novère N. (2012). Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. *Frontiers in neuroinformatics*. 6 [PubMed]

Mattioni M, Le Novère N. (2013). Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum. *PloS one*. 8 [PubMed]

Morén J, Shibata T, Doya K. (2013). The mechanism of saccade motor pattern generation investigated by a large-scale spiking neuron model of the superior colliculus. *PloS one*. 8 [PubMed]

Mäki-Marttunen T, Aćimović J, Ruohonen K, Linne ML. (2013). Structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework. *PloS one*. 8 [PubMed]

Richert M, Nageswaran JM, Dutt N, Krichmar JL. (2011). An efficient simulation environment for modeling large-scale cortical processing. *Frontiers in neuroinformatics*. 5 [PubMed]

Sadeh S, Rotter S. (2015). Orientation selectivity in inhibition-dominated networks of spiking neurons: effect of single neuron properties and network dynamics. *PLoS computational biology*. 11 [PubMed]

Sherfey JS et al. (2018). DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. *Frontiers in neuroinformatics*. 12 [PubMed]

Shimoura RO et al. (2018). [Re] The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model *The ReScience Journal*. 4(1)

Solanka L, van Rossum MC, Nolan MF. (2015). Noise promotes independent control of gamma oscillations and grid firing within recurrent attractor networks. *eLife*. 4 [PubMed]

Tikidji-Hamburyan RA, El-Ghazawi TA, Narayana V, Bozkus Z. (2017). Software for Brain Network Simulations: A Comparative Study *Front. Neuroinform.*.

Tomm C, Avermann M, Petersen C, Gerstner W, Vogels TP. (2014). Connection-type-specific biases make uniform random network models consistent with cortical recordings. *Journal of neurophysiology*. 112 [PubMed]

Tomsett RJ et al. (2015). Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue. *Brain structure & function*. 220 [PubMed]

Vannucci L, Falotico E, Laschi C. (2017). Proprioceptive Feedback through a Neuromorphic Muscle Spindle Model. *Frontiers in neuroscience*. 11 [PubMed]

Versace M, Ames H, Léveillé J, Fortenberry B, Gorchetchnikov A. (2008). KInNeSS: a modular framework for computational neuroscience. *Neuroinformatics*. 6 [PubMed]

Yamazaki T et al. (2011). Simulation Platform: a cloud-based online simulation environment. *Neural networks : the official journal of the International Neural Network Society*. 24 [PubMed]