Gewaltig MO, Cannon R. (2014). Current practice in software development for computational neuroscience and how to improve it. PLoS computational biology. 10 [PubMed]

See more from authors: Gewaltig MO · Cannon R

References and models cited by this paper

Baxter SM, Day SW, Fetrow JS, Reisinger SJ. (2006). Scientific software development is not an oxymoron. PLoS computational biology. 2 [PubMed]

Bednar JA. (2009). Topographica: Building and Analyzing Map-Level Simulations from Python, C/C++, MATLAB, NEST, or NEURON Components. Frontiers in neuroinformatics. 3 [PubMed]

Bhalla US, Bilitch DH, Bower JM. (1992). Rallpacks: a set of benchmarks for neuronal simulators. Trends in neurosciences. 15 [PubMed]

Bower JM, Beeman D. (1998). The Book Of Genesis: Exploring Realistic Neural Models With The General Neural Simulation System.

Brooks F. (1995). The mythical man-month: essays on software engineering.

Cannon RC et al. (2007). Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics. 5 [PubMed]

Cannon RC, O'Donnell C, Nolan MF. (2010). Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS computational biology. 6 [PubMed]

Davison AP et al. (2008). PyNN: A Common Interface for Neuronal Network Simulators. Frontiers in neuroinformatics. 2 [PubMed]

De Schutter E. (2008). Why are computational neuroscience and systems biology so separate? PLoS computational biology. 4 [PubMed]

De Schutter E. (2013). Collaborative modeling in neuroscience: time to go open model? Neuroinformatics. 11 [PubMed]

Diesmann M, Aertsen A, Gewaltig MO. (1995). SYNOD: An environment forneural systems simulations: Language interface and tutorial Tel Aviv:Weizmann Institute of Science.

Diesmann M, Gewaltig M-O. (2007). NEST (Neural Simulation Tool) Scholarpedia. 2

Djurfeldt M et al. (2010). Run-time interoperability between neuronal network simulators based on the MUSIC framework. Neuroinformatics. 8 [PubMed]

Donoho DL, Stodden V, Maleki A, Ur_rahman I , Shahram M. (2009). Fifteen years of reproducible research in computational harmonic analysis Ieee Computing In Science And Engineering. 11

Et al et al. (2003). An overview of Trilinos. Sandina National Laboratories Report 2003-2927.

Gillespie DT. (1977). Exact stochastic simulation of coupled chemical reactions. Journal Of Physical Chemistry. 81

Gleeson P et al. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS computational biology. 6 [PubMed]

Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]

Goodman D, Brette R. (2008). Brian: a simulator for spiking neural networks in python. Frontiers in neuroinformatics. 2 [PubMed]

Hines M, De Schutter E, Howell F, Goddard N, Hood G. (2001). NEOSIM: Portable largescaleplug and play modelling Neurocomputing. 38-40

Hines ML, Carnevale NT. (2003). NEURON simulation environment The Handbook of Brain Theory and Neural Networks (2nd Ed).

House_of_Commons_Science_and_Technology_Committee . (2010). The disclosure of climate data from the Climatic Research Unit at the University of East Anglia Eighth Report of Session 2009-10. II

Ince DC, Hatton L, Graham-Cumming J. (2012). The case for open computer programs. Nature. 482 [PubMed]

Interagency_modeling , Analysis_group . (2009). Futures Meeting: the impact of modeling on biomedical research, final report http:--www.imagwiki.org-mediawiki-imagesfl8203;-9-99-IFM2009_Final_Report.doc.

Izhikevich EM. (2003). Simple model of spiking neurons. IEEE transactions on neural networks. 14 [PubMed]

Izhikevich EM. (2010). Hybrid spiking models. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences. 368 [PubMed]

Kennedy D. (2006). Where's the beef ? Missing data in the information age. Neuroinformatics. 4 [PubMed]

Markram H. (2006). The blue brain project. Nature reviews. Neuroscience. 7 [PubMed]

Matsumoto M, Nishimura T. (1998). Marsenne Twister: A 623-dimensionally equidistributed uniform pseudorandom number generator ACM Trans On Modelling And Computer Simulation. 8

Miller G. (2006). Scientific publishing. A scientist's nightmare: software problem leads to five retractions. Science (New York, N.Y.). 314 [PubMed]

National_Science_Foundation . (2010). Dear Colleague Letter: Software Infrastructure for Sustained Innovation (SI2) NSF 10-029.

Nelson B. (2009). Data sharing: Empty archives. Nature. 461 [PubMed]

Neylon C et al. (2012). Changing computational research. The challenges ahead. Source code for biology and medicine. 7 [PubMed]

Perlewitz J. (2013). http:--home.earthlink.net-~perlewitz-.

Post DE, Votta LG. (2005). Computational science demands a new paradigm Phys Today. 58

Wilson G. (2006). Where's the real bottleneck in scientific computing Am Sci. 94

References and models that cite this paper

Jȩdrzejewski-Szmek Z, Abrahao KP, Jȩdrzejewska-Szmek J, Lovinger DM, Blackwell KT. (2018). Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Frontiers in neuroinformatics. 12 [PubMed]

Stockton DB, Santamaria F. (2015). NeuroManager: a workflow analysis based simulation management engine for computational neuroscience. Frontiers in neuroinformatics. 9 [PubMed]

This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.