Anderson WS, Kudela P, Cho J, Bergey GK, Franaszczuk PJ. (2007). Studies of stimulus parameters for seizure disruption using neural network simulations. Biological cybernetics. 97 [PubMed]
Bednar JA, Kelkar A, Miikkulainen R. (2004). Scaling self-organizing maps to model large cortical networks. Neuroinformatics. 2 [PubMed]
Bhalla US. (2002). Biochemical signaling networks decode temporal patterns of synaptic input. Journal of computational neuroscience. 13 [PubMed]
Blackwell KT. (2004). Paired turbulence and light do not produce a supralinear calcium increase in Hermissenda. Journal of computational neuroscience. 17 [PubMed]
Blackwell KT. (2006). Ionic currents underlying difference in light response between type A and type B photoreceptors. Journal of neurophysiology. 95 [PubMed]
Brette R, Gerstner W. (2005). Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. Journal of neurophysiology. 94 [PubMed]
Brette R, Goodman DF. (2011). Vectorized algorithms for spiking neural network simulation. Neural computation. 23 [PubMed]
Butson CR, Clark GA. (2008). Random noise paradoxically improves light-intensity encoding in Hermissenda photoreceptor network. Journal of neurophysiology. 99 [PubMed]
Cannon RC, Howell FW, Goddard NH, De Schutter E. (2002). Non-curated distributed databases for experimental data and models in neuroscience. Network (Bristol, England). 13 [PubMed]
Carrillo RR, Ros E, Barbour B, Boucheny C, Coenen O. (2007). Event-driven simulation of neural population synchronization facilitated by electrical coupling. Bio Systems. 87 [PubMed]
Carrillo RR, Ros E, Tolu S, Nieus T, D'Angelo E. (2008). Event-driven simulation of cerebellar granule cells. Bio Systems. 94 [PubMed]
Crone JC et al. (2019). Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator Frontiers in Neuroinformatics. 13
Dai Y, Jones KE, Fedirchuk B, McCrea DA, Jordan LM. (2002). A modelling study of locomotion-induced hyperpolarization of voltage threshold in cat lumbar motoneurones. The Journal of physiology. 544 [PubMed]
Davison A. (2004). Biologically-detailed network modelling (Chapter 10) Computation Neuroscience: A Comprehensive Approach.
De Schutter E. (2014). The dangers of plug-and-play simulation using shared models. Neuroinformatics. 12 [PubMed]
De Schutter E, Jaeger D, Steuber V. (2004). Passive models of neurons in the deep cerebellar nuclei: the effect of reconstruction errors Neurocomputing. 58-60
Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S. (2014). A flexible, interactive software tool for fitting the parameters of neuronal models. Frontiers in neuroinformatics. 8 [PubMed]
Gabbiani F, Cox SJ. (2010). Mathematics for Neuroscientists.
García-Grajales JA, Rucabado G, García-Dopico A, Peña JM, Jérusalem A. (2015). Neurite, a finite difference large scale parallel program for the simulation of electrical signal propagation in neurites under mechanical loading. PloS one. 10 [PubMed]
Gewaltig MO, Cannon R. (2014). Current practice in software development for computational neuroscience and how to improve it. PLoS computational biology. 10 [PubMed]
Gleeson P et al. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS computational biology. 6 [PubMed]
Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]
Gottschalk A, Haney P. (2003). Computational aspects of anesthetic action in simple neural models. Anesthesiology. 98 [PubMed]
Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G. (2014). 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. Frontiers in neuroinformatics. 8 [PubMed]
Heitmann S, Breakspear M. (2017). Chapter 1 Handbook for the Brain Dynamics Toolbox: Version 2018a.
Hernández OE, Zurek EE. (2013). Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON's programming language hoc. BMC medical education. 13 [PubMed]
Hill AA, Lu J, Masino MA, Olsen OH, Calabrese RL. (2001). A model of a segmental oscillator in the leech heartbeat neuronal network. Journal of computational neuroscience. 10 [PubMed]
Hill AA, Masino MA, Calabrese RL. (2002). Model of intersegmental coordination in the leech heartbeat neuronal network. Journal of neurophysiology. 87 [PubMed]
Hjorth J, Blackwell KT, Kotaleski JH. (2009). Gap junctions between striatal fast-spiking interneurons regulate spiking activity and synchronization as a function of cortical activity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]
Humphries MD, Gurney K. (2007). Solution methods for a new class of simple model neurons. Neural computation. 19 [PubMed]
Huss M et al. (2007). Roles of ionic currents in lamprey CpG neurons: a modeling study. Journal of neurophysiology. 97 [PubMed]
Häusser M, Spruston N, Stuart GJ. (2000). Diversity and dynamics of dendritic signaling. Science (New York, N.Y.). 290 [PubMed]
Jackson ME, Cauller LJ. (1997). Evaluation of simplified compartmental models of reconstructed neocortical neurons for use in large-scale simulations of biological neural networks. Brain research bulletin. 44 [PubMed]
Jędrzejewska-Szmek J, Damodaran S, Dorman DB, Blackwell KT. (2017). Calcium dynamics predict direction of synaptic plasticity in striatal spiny projection neurons. The European journal of neuroscience. 45 [PubMed]
Kotaleski JH et al. (2011). Striatal fast-spiking interneurons: from firing patterns to postsynaptic impact Front. Syst. Neurosci.. 5:57
Kozloski J, Wagner J. (2011). An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Frontiers in neuroinformatics. 5 [PubMed]
Kozlov A, Kotaleski JH, Aurell E, Grillner S, Lansner A. (2001). Modeling of substance P and 5-HT induced synaptic plasticity in the lamprey spinal CPG: consequences for network pattern generation. Journal of computational neuroscience. 11 [PubMed]
Kozlov AK, Kardamakis AA, Hellgren Kotaleski J, Grillner S. (2014). Gating of steering signals through phasic modulation of reticulospinal neurons during locomotion. Proceedings of the National Academy of Sciences of the United States of America. 111 [PubMed]
Kubota Y, Bower JM. (2001). Transient versus asymptotic dynamics of CaM kinase II: possible roles of phosphatase. Journal of computational neuroscience. 11 [PubMed]
Kullmann PH, Wheeler DW, Beacom J, Horn JP. (2004). Implementation of a fast 16-Bit dynamic clamp using LabVIEW-RT. Journal of neurophysiology. 91 [PubMed]
Lamb DG, Calabrese RL. (2013). Correlated conductance parameters in leech heart motor neurons contribute to motor pattern formation. PloS one. 8 [PubMed]
Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]
Lin RJ, Jaeger D. (2011). Using computer simulations to determine the limitations of dynamic clamp stimuli applied at the soma in mimicking distributed conductance sources. Journal of neurophysiology. 105 [PubMed]
Lindsay AE, Lindsay KA, Rosenberg JR. (2005). Increased computational accuracy in multi-compartmental cable models by a novel approach for precise point process localization. Journal of computational neuroscience. 19 [PubMed]
Luthman J et al. (2011). STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron. Cerebellum (London, England). 10 [PubMed]
Lytton WW. (2006). Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics. 4 [PubMed]
Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Frontiers in computational neuroscience. 4 [PubMed]
Mattioni M, Cohen U, Le Novère N. (2012). Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. Frontiers in neuroinformatics. 6 [PubMed]
Mattioni M, Le Novère N. (2013). Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum. PloS one. 8 [PubMed]
Mazza M, de Pinho M, Piqueira JR, Roque AC. (2004). A dynamical model of fast cortical reorganization. Journal of computational neuroscience. 16 [PubMed]
McDougal RA, Hines ML, Lytton WW. (2013). Reaction-diffusion in the NEURON simulator. Frontiers in neuroinformatics. 7 [PubMed]
Morse TM. (2008). ModelDB in computational neuroscience education - a research tool as interactive educational media. Brains, minds & media : journal of new media in neural and cognitive science and education. 3 [PubMed]
Nenadic Z, Ghosh BK, Ulinski P. (2003). Propagating waves in visual cortex: a large-scale model of turtle visual cortex. Journal of computational neuroscience. 14 [PubMed]
Nenadic Z, Ghosh BK, Ulinski PS. (2002). Modeling and estimation problems in the turtle visual cortex. IEEE transactions on bio-medical engineering. 49 [PubMed]
O'Connor S, Angelo K, Jacob TJ. (2012). Burst firing versus synchrony in a gap junction connected olfactory bulb mitral cell network model Frontiers in computational neuroscience. 6 [PubMed]
Omurtag A, Lytton WW. (2010). Spectral method and high-order finite differences for the nonlinear cable equation. Neural computation. 22 [PubMed]
Parekh R, Ascoli GA. (2013). Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron. 77 [PubMed]
Ray S, Bhalla US. (2008). PyMOOSE: Interoperable Scripting in Python for MOOSE. Frontiers in neuroinformatics. 2 [PubMed]
Ros E, Carrillo R, Ortigosa EM, Barbour B, Agís R. (2006). Event-driven simulation scheme for spiking neural networks using lookup tables to characterize neuronal dynamics. Neural computation. 18 [PubMed]
Santamaria F, Jaeger D, De Schutter E, Bower JM. (2002). Modulatory effects of parallel fiber and molecular layer interneuron synaptic activity on purkinje cell responses to ascending segment input: a modeling study. Journal of computational neuroscience. 13 [PubMed]
Segev I, London M. (2000). Untangling dendrites with quantitative models. Science (New York, N.Y.). 290 [PubMed]
Stanley DA, Bardakjian BL, Spano ML, Ditto WL. (2011). Stochastic amplification of calcium-activated potassium currents in Ca2+ microdomains. Journal of computational neuroscience. 31 [PubMed]
Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.
Steuber V, Jaeger D. (2013). Modeling the generation of output by the cerebellar nuclei. Neural networks : the official journal of the International Neural Network Society. 47 [PubMed]
Steuber V et al. (2007). Cerebellar LTD and pattern recognition by Purkinje cells. Neuron. 54 [PubMed]
Tikidji-Hamburyan RA, El-Ghazawi TA, Narayana V, Bozkus Z. (2017). Software for Brain Network Simulations: A Comparative Study Front. Neuroinform..
Tobin AE, Van Hooser SD, Calabrese RL. (2006). Creation and reduction of a morphologically detailed model of a leech heart interneuron. Journal of neurophysiology. 96 [PubMed]
Tunstall MJ, Roberts A, Soffe SR. (2002). Modelling inter-segmental coordination of neuronal oscillators: synaptic mechanisms for uni-directional coupling during swimming in Xenopus tadpoles. Journal of computational neuroscience. 13 [PubMed]
Ujfalussy B, Kiss T. (2006). How do glutamatergic and GABAergic cells contribute to synchronization in the medial septum? Journal of computational neuroscience. 21 [PubMed]
Versace M, Ames H, Léveillé J, Fortenberry B, Gorchetchnikov A. (2008). KInNeSS: a modular framework for computational neuroscience. Neuroinformatics. 6 [PubMed]
Wang W, Campaigne C, Ghosh BK, Ulinski PS. (2005). Two cortical circuits control propagating waves in visual cortex. Journal of computational neuroscience. 19 [PubMed]
Wang W, Luo S, Ghosh BK, Ulinski PS. (2006). Generation of the receptive fields of subpial cells in turtle visual cortex. Journal of integrative neuroscience. 5 [PubMed]
Woo B, Shin D, Yang D, Choi J. (2005). Reduced model and simulation of neuron with passive dendritic cable: an eigenfunction expansion approach. Journal of computational neuroscience. 19 [PubMed]
Wu SN. (2004). Simulations of the cardiac action potential based on the Hodgkin-Huxley kinetics with the use of Microsoft Excel spreadsheets. The Chinese journal of physiology. 47 [PubMed]
Yamazaki T et al. (2011). Simulation Platform: a cloud-based online simulation environment. Neural networks : the official journal of the International Neural Network Society. 24 [PubMed]
van Drongelen W et al. (2006). Role of persistent sodium current in bursting activity of mouse neocortical networks in vitro. Journal of neurophysiology. 96 [PubMed]
van Drongelen W, Lee HC, Stevens RL, Hereld M. (2007). propagation of seizure-like activity in a model of neocortex. Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society. 24 [PubMed]