Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006)

Ascoli GA. (2002). Neuroanatomical algorithms for dendritic modelling. Network (Bristol, England). 13 [PubMed]

Ascoli GA, Krichmar JL, Nasuto SJ, Senft SL. (2001). Generation, description and storage of dendritic morphology data. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 356 [PubMed]

Ascoli GA, Krichmar JL, Scorcioni R, Nasuto SJ, Senft SL. (2001). Computer generation and quantitative morphometric analysis of virtual neurons. Anatomy and embryology. 204 [PubMed]

Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ. (1998). Computational models of thalamocortical augmenting responses. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

• Thalamocortical augmenting response (Bazhenov et al 1998) [Model]

Bower JM, Beeman D. (1998). The Book Of Genesis: Exploring Realistic Neural Models With The General Neural Simulation System.

Chover J, Haberly LB, Lytton WW. (2001). Alternating dominance of NMDA and AMPA for learning and recall: a computer model. Neuroreport. 12 [PubMed]

Davison AP, Morse TM, Migliore M, Shepherd GM, Hines ML. (2004). Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics. 2 [PubMed]

Galassi M, Gough B, Jungman G. (2001). Gnu scientific library: Reference manual.

Goddard NH et al. (2001). Towards NeuroML: model description methods for collaborative modelling in neuroscience. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 356 [PubMed]

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]

Lytton WW. (2002). From Computer To Brain.

Poirazi P, Brannon T, Mel BW. (2003). Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron. 37 [PubMed]

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poirazi P, Brannon T, Mel BW. (2003). Pyramidal neuron as two-layer neural network. Neuron. 37 [PubMed]

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Press WH, Teukolsky SA, Flannery BP, Vellerling WT. (1992). Numerical Recipes In C: The Art Of Scientific Computing.

Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN. (2007). Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia. Journal of neurophysiology. 98 [PubMed]

• Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007) [Model]

Lytton WW, Neymotin SA, Hines ML. (2008). The virtual slice setup. Journal of neuroscience methods. 171 [PubMed]

• The virtual slice setup (Lytton et al. 2008) [Model]

Lytton WW, Omurtag A. (2007). Tonic-clonic transitions in computer simulation. Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society. 24 [PubMed]

• Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007) [Model]

Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural computation. 28 [PubMed]

• Parallelizing large networks in NEURON (Lytton et al. 2016) [Model]

Neymotin SA et al. (2013). Ih tunes theta/gamma oscillations and cross-frequency coupling in an in silico CA3 model. PloS one. 8 [PubMed]

• Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013) [Model]

Neymotin SA, Jacobs KM, Fenton AA, Lytton WW. (2011). Synaptic information transfer in computer models of neocortical columns. Journal of computational neuroscience. 30 [PubMed]

• Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010) [Model]

Neymotin SA et al. (2011). Ketamine disrupts ? modulation of ? in a computer model of hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Neymotin SA et al. (2011). Ketamine Disrupts Theta Modulation of Gamma in a Computer Model of Hippocampus The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011) [Model]

Neymotin SA, Lee H, Fenton AA, Lytton WW. (2010). Interictal EEG discoordination in a rat seizure model. Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society. 27 [PubMed]

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW. (2011). Emergence of physiological oscillation frequencies in a computer model of neocortex. Frontiers in computational neuroscience. 5 [PubMed]

• Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011) [Model]

Uhlrich DJ, Neymotin S, Manning KA. (2008). Data mining of time-domain features from neural extracellular field data Applic. of Comput. Intel. in Bioinf. and Biomed.: Current Trends and Open Problems. 151

• NEURON interfaces to MySQL and the SPUD feature extraction algorithm (Neymotin et al. 2008) [Model]