Adelson EH, Bergen JR. (1985). Spatiotemporal energy models for the perception of motion. Journal of the Optical Society of America. A, Optics and image science. 2 [PubMed]

Amitai Y, Friedman A, Connors BW, Gutnick MJ. (1993). Regenerative activity in apical dendrites of pyramidal cells in neocortex. Cerebral cortex (New York, N.Y. : 1991). 3 [PubMed]

Archie KA, Mel BW. (2000). A model for intradendritic computation of binocular disparity. Nature neuroscience. 3 [PubMed]

• Visual Cortex Neurons: Dendritic computations (Archie, Mel 2000) [Model]

Cannon RC, Turner DA, Pyapali GK, Wheal HV. (1998). An on-line archive of reconstructed hippocampal neurons. Journal of neuroscience methods. 84 [PubMed]

Cauller LJ, Connors BW. (1992). Functions of very distal dendrites: experimental and computational studies of layer I synapses on neocortical pyramidal cells. Single Neuron Computation.

Chance FS, Abbott LF, Reyes AD. (2002). Gain modulation from background synaptic input. Neuron. 35 [PubMed]

Golding NL, Jung HY, Mickus T, Spruston N. (1999). Dendritic calcium spike initiation and repolarization are controlled by distinct potassium channel subtypes in CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Heeger DJ. (1992). Half-squaring in responses of cat striate cells. Visual neuroscience. 9 [PubMed]

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Häusser M, Spruston N, Stuart GJ. (2000). Diversity and dynamics of dendritic signaling. Science (New York, N.Y.). 290 [PubMed]

Kapadia MK, Ito M, Gilbert CD, Westheimer G. (1995). Improvement in visual sensitivity by changes in local context: parallel studies in human observers and in V1 of alert monkeys. Neuron. 15 [PubMed]

Koch C, Poggio T, Torre V. (1982). Retinal ganglion cells: a functional interpretation of dendritic morphology. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 298 [PubMed]

Llinas R, Nicholson C. (1971). Electrophysiological properties of dendrites and somata in alligator Purkinje cells. Journal of neurophysiology. 34 [PubMed]

Magee JC, Cook EP. (2000). Somatic EPSP amplitude is independent of synapse location in hippocampal pyramidal neurons. Nature neuroscience. 3 [PubMed]

• CA1 pyramidal neuron: Synaptic Scaling (Magee, Cook 2000) [Model]

McAdams CJ, Maunsell JH. (1999). Effects of attention on orientation-tuning functions of single neurons in macaque cortical area V4. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Megías M, Emri Z, Freund TF, Gulyás AI. (2001). Total number and distribution of inhibitory and excitatory synapses on hippocampal CA1 pyramidal cells. Neuroscience. 102 [PubMed]

Mel BW. (1992). NMDA-based pattern discrimination in a modeled cortical neuron. Neural Comput. 4

Mel BW. (1992). The clusteron: toward a simple abstraction for a complex neuron Advances in Neural Information Processing Systems 11. 4

Mel BW. (1993). Synaptic integration in an excitable dendritic tree. Journal of neurophysiology. 70 [PubMed]

Mel BW. (1999). Why have dendrites? A computational perspective. Dendrites. Stuart G, Spruston N, and Hausser M eds..

Mel BW, Ruderman DL, Archie KA. (1998). Translation-invariant orientation tuning in visual "complex" cells could derive from intradendritic computations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Ohzawa I, DeAngelis GC, Freeman RD. (1997). Encoding of binocular disparity by complex cells in the cat's visual cortex. Journal of neurophysiology. 77 [PubMed]

Peterhans E, von der Heydt R. (1989). Mechanisms of contour perception in monkey visual cortex. II. Contours bridging gaps. The Journal of neuroscience : the official journal of the Society for Neuroscience. 9 [PubMed]

Pitts W, Mccullough W. (1943). A logical calculus of the ideas immanent in nervous activity Bull Math Biophys. 5

Poirazi P, Brannon T, Mel BW. (2003). Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron. 37 [PubMed]

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poirazi P, Mel BW. (2001). Impact of active dendrites and structural plasticity on the memory capacity of neural tissue. Neuron. 29 [PubMed]

Rosenblatt F. (1962). Principles Of Neurodynamics.

Rumelhart D, Hinton G, Mcclelland J. (1986). A general framework for parallel distributed processing Parallel Distributed Processing:Explor. in the microstr. of cognit. Rumelhart D and McClelland J eds. 1

Salinas E, Thier P. (2000). Gain modulation: a major computational principle of the central nervous system. Neuron. 27 [PubMed]

Schiller J, Major G, Koester HJ, Schiller Y. (2000). NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature. 404 [PubMed]

Segev I, London M. (2000). Untangling dendrites with quantitative models. Science (New York, N.Y.). 290 [PubMed]

Segev I, Rall W. (1987). Functional possibilities for synapses on dendrites and on dendritic spines. Synaptic Function. Edelman G, Gall W, and Cowan W eds..

Shepherd GM, Brayton RK. (1987). Logic operations are properties of computer-simulated interactions between excitable dendritic spines. Neuroscience. 21 [PubMed]

Spruston N, Hausser M, Stuart G. (1999). Dendrites..

Wei DS et al. (2001). Compartmentalized and binary behavior of terminal dendrites in hippocampal pyramidal neurons. Science (New York, N.Y.). 293 [PubMed]

Zipser D, Andersen RA. (1988). A back-propagation programmed network that simulates response properties of a subset of posterior parietal neurons. Nature. 331 [PubMed]

Amatrudo JM et al. (2012). Influence of highly distinctive structural properties on the excitability of pyramidal neurons in monkey visual and prefrontal cortices. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

• Rhesus Monkey Layer 3 Pyramidal Neurons: V1 vs PFC (Amatrudo, Weaver et al. 2012) [Model]

Anwar H et al. (2014). Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Frontiers in cellular neuroscience. 8 [PubMed]

• Calcium dynamics depend on dendritic diameters (Anwar et al. 2014) [Model]

Arkhipov A et al. (2018). Visual physiology of the layer 4 cortical circuit in silico. PLoS computational biology. 14 [PubMed]

• Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018) [Model]

Arsiero M, Lüscher HR, Lundstrom BN, Giugliano M. (2007). The impact of input fluctuations on the frequency-current relationships of layer 5 pyramidal neurons in the rat medial prefrontal cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Input Fluctuations effects on f-I curves (Arsiero et al. 2007) [Model]

Ashhad S, Narayanan R. (2013). Quantitative interactions between the A-type K+ current and inositol trisphosphate receptors regulate intraneuronal Ca2+ waves and synaptic plasticity. The Journal of physiology. 591 [PubMed]

• Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013) [Model]

Azouz R. (2005). Dynamic spatiotemporal synaptic integration in cortical neurons: neuronal gain, revisited. Journal of neurophysiology. 94 [PubMed]

Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Behabadi BF, Mel BW. (2014). Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proceedings of the National Academy of Sciences of the United States of America. 111 [PubMed]

• Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014) [Model]

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW. (2012). Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS computational biology. 8 [PubMed]

• Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012) [Model]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]

Bianchi D et al. (2012). On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons. Journal of computational neuroscience. 33 [PubMed]

• CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012) [Model]

Bilash OM, Chavlis S, Johnson CD, Poirazi P, Basu J. (2023). Lateral entorhinal cortex inputs modulate hippocampal dendritic excitability by recruiting a local disinhibitory microcircuit. Cell reports. 42 [PubMed]

• Hippocampal CA1 microcircuit model including somatic and dendritic inhibition (Bilash et al, 2023) [Model]

Branco T, Clark BA, Häusser M. (2010). Dendritic discrimination of temporal input sequences in cortical neurons. Science (New York, N.Y.). 329 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Branco T, Häusser M. (2011). Synaptic integration gradients in single cortical pyramidal cell dendrites. Neuron. 69 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Cazé RD, Jarvis S, Foust AJ, Schultz SR. (2017). Dendrites Enable a Robust Mechanism for Neuronal Stimulus Selectivity. Neural computation. 29 [PubMed]

• Dendrites enable a robust mechanism for neuronal stimulus selectivity (Caze et al 2017) [Model]

Combe CL, Canavier CC, Gasparini S. (2018). Intrinsic Mechanisms of Frequency Selectivity in the Proximal Dendrites of CA1 Pyramidal Neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 38 [PubMed]

• CA1 pyramidal neuron (Combe et al 2018) [Model]

Cutsuridis V, Cobb S, Graham BP. (2010). Encoding and retrieval in a model of the hippocampal CA1 microcircuit. Hippocampus. 20 [PubMed]

• Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) [Model]

Cutsuridis V, Poirazi P. (2015). A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop. Neurobiology of learning and memory. 120 [PubMed]

• Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015) [Model]

Dan O, Hopp E, Borst A, Segev I. (2018). Non-uniform weighting of local motion inputs underlies dendritic computation in the fly visual system. Scientific reports. 8 [PubMed]

• Vertical system (VS) fly cells with biophysics (Dan et al 2018) [Model]

Domijan D. (2004). Recurrent network with large representational capacity. Neural computation. 16 [PubMed]

Doron M, Chindemi G, Muller E, Markram H, Segev I. (2017). Timed Synaptic Inhibition Shapes NMDA Spikes, Influencing Local Dendritic Processing and Global I/O Properties of Cortical Neurons. Cell reports. 21 [PubMed]

• Shaping NMDA spikes by timed synaptic inhibition on L5PC (Doron et al. 2017) [Model]

Eyal G et al. (2018). Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Frontiers in cellular neuroscience. 12 [PubMed]

• Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018) [Model]

Frank AC et al. (2018). Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory. Nature communications. 9 [PubMed]

• Hotspots of dendritic spine turnover facilitates new spines and NN sparsity (Frank et al 2018) [Model]

Gasparini S, Migliore M, Magee JC. (2004). On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

• CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) [Model]

Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]

Graham BP, Saudargiene A, Cobb S. (2014). Spine head calcium as a measure of summed postsynaptic activity for driving synaptic plasticity. Neural computation. 26 [PubMed]

• Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014) [Model]

Gómez González JF, Mel BW, Poirazi P. (2011). Distinguishing Linear vs. Non-Linear Integration in CA1 Radial Oblique Dendrites: It's about Time. Frontiers in computational neuroscience. 5 [PubMed]

• Linear vs non-linear integration in CA1 oblique dendrites (Gómez González et al. 2011) [Model]

Hao J, Wang XD, Dan Y, Poo MM, Zhang XH. (2009). An arithmetic rule for spatial summation of excitatory and inhibitory inputs in pyramidal neurons. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

• Spatial summation of excitatory and inhibitory inputs in pyramidal neurons (Hao et al. 2010) [Model]

Hardie JB, Pearce RA. (2006). Active and passive membrane properties and intrinsic kinetics shape synaptic inhibition in hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Hawkins J, Ahmad S. (2016). Why Neurons Have Thousands of Synapses, a Theory of Sequence Memory in Neocortex. Frontiers in neural circuits. 10 [PubMed]

• Theory of sequence memory in neocortex (Hawkins & Ahmad 2016) [Model]

Hines ML, Markram H, Schürmann F. (2008). Fully implicit parallel simulation of single neurons. Journal of computational neuroscience. 25 [PubMed]

• Fully Implicit Parallel Simulation of Single Neurons (Hines et al. 2008) [Model]

Hiratani N, Fukai T. (2017). Detailed Dendritic Excitatory/Inhibitory Balance through Heterosynaptic Spike-Timing-Dependent Plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37 [PubMed]

• Heterosynaptic Spike-Timing-Dependent Plasticity (Hiratani & Fukai 2017) [Model]

Huys QJ, Ahrens MB, Paninski L. (2006). Efficient estimation of detailed single-neuron models. Journal of neurophysiology. 96 [PubMed]

• Efficient estimation of detailed single-neuron models (Huys et al. 2006) [Model]

Huys QJ, Zemel RS, Natarajan R, Dayan P. (2007). Fast population coding. Neural computation. 19 [PubMed]

• Fast population coding (Huys et al. 2007) [Model]

Häusser M, Mel B. (2003). Dendrites: bug or feature? Current opinion in neurobiology. 13 [PubMed]

Iannella N, Tanaka S. (2006). Synaptic efficacy cluster formation across the dendrite via STDP. Neuroscience letters. 403 [PubMed]

Katona G et al. (2011). Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proceedings of the National Academy of Sciences of the United States of America. 108 [PubMed]

• CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011) [Model]

Le Franc Y, Le Masson G. (2010). Multiple firing patterns in deep dorsal horn neurons of the spinal cord: computational analysis of mechanisms and functional implications. Journal of neurophysiology. 104 [PubMed]

Legenstein R, Maass W. (2011). Branch-specific plasticity enables self-organization of nonlinear computation in single neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Lindsay AE, Lindsay KA, Rosenberg JR. (2005). Increased computational accuracy in multi-compartmental cable models by a novel approach for precise point process localization. Journal of computational neuroscience. 19 [PubMed]

• Increased computational accuracy in multi-compartmental cable models (Lindsay et al. 2005) [Model]

Lytton WW. (2006). Neural Query System: Data-mining from within the NEURON simulator. Neuroinformatics. 4 [PubMed]

• Neural Query System NQS Data-Mining From Within the NEURON Simulator (Lytton 2006) [Model]

Major G, Polsky A, Denk W, Schiller J, Tank DW. (2008). Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. Journal of neurophysiology. 99 [PubMed]

Menon V et al. (2013). Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites. Neuron. 80 [PubMed]

• Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013) [Model]

Migliore M, Ferrante M, Ascoli GA. (2005). Signal propagation in oblique dendrites of CA1 pyramidal cells. Journal of neurophysiology. 94 [PubMed]

• CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005) [Model]

Migliore M, Novara G, Tegolo D. (2008). Single neuron binding properties and the magical number 7. Hippocampus. 18 [PubMed]

• CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008) [Model]

Migliore M, Tegolo D, Spera E, Unsworth N. (2016). On the cellular mechanisms underlying working memory capacity in humans Neural Network World. 4

• Model of CA1 activity during working memory task (Spera et al. 2016) [Model]

Mo CH, Gu M, Koch C. (2004). A learning rule for local synaptic interactions between excitation and shunting inhibition. Neural computation. 16 [PubMed]

Morita K. (2008). Possible role of dendritic compartmentalization in the spatial working memory circuit. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Working memory circuit with branched dendrites (Morita 2008) [Model]

Morita K, Okada M, Aihara K. (2007). Selectivity and stability via dendritic nonlinearity. Neural computation. 19 [PubMed]

Mukunda CL, Narayanan R. (2017). Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. The Journal of physiology. 595 [PubMed]

• Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017) [Model]

Murphy BK, Miller KD. (2003). Multiplicative gain changes are induced by excitation or inhibition alone. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Mäki-Marttunen T et al. (2019). Computational modeling of genetic contributions to excitability and neural coding in layer V pyramidal cells: applications to schizophrenia pathology Front. Comput. Neurosci.. 13

• Layer V pyramidal cell functions and schizophrenia genetics (Mäki-Marttunen et al 2019) [Model]

Podlaski WF et al. (2017). Mapping the function of neuronal ion channels in model and experiment. eLife. 6 [PubMed]

Poirazi P, Brannon T, Mel BW. (2003). Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron. 37 [PubMed]

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poirazi P, Brannon T, Mel BW. (2003). Online Supplement: About the Model Neuron. 37 Online

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poleg-Polsky A. (2015). Effects of Neural Morphology and Input Distribution on Synaptic Processing by Global and Focal NMDA-Spikes. PloS one. 10 [PubMed]

• Effects of neural morphology on global and focal NMDA-spikes (Poleg-Polsky 2015) [Model]

Poleg-Polsky A. (2019). Dendritic spikes expand the range of well-tolerated population noise structures. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• Distinct integration properties of noisy inputs in active dendritic subunits (Poleg-Polsky 2019) [Model]

Polsky A, Mel B, Schiller J. (2009). Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

• NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]

Polsky A, Mel BW, Schiller J. (2004). Computational subunits in thin dendrites of pyramidal cells. Nature neuroscience. 7 [PubMed]

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Rabinowitch I, Segev I. (2008). Two opposing plasticity mechanisms pulling a single synapse. Trends in neurosciences. 31 [PubMed]

• Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b) [Model]

Ros E, Carrillo R, Ortigosa EM, Barbour B, Agís R. (2006). Event-driven simulation scheme for spiking neural networks using lookup tables to characterize neuronal dynamics. Neural computation. 18 [PubMed]

Tomko M, Benuskova L, Jedlicka P. (2021). A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit. Scientific reports. 11 [PubMed]

• Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21) [Model]

Trpevski D, Khodadadi Z, Carannante I, Hellgren Kotaleski J. (2023). Glutamate spillover drives robust all-or-none dendritic plateau potentials-an in silico investigation using models of striatal projection neurons. Frontiers in cellular neuroscience. 17 [PubMed]

• Glutamate spillover and plateau potentials (Trpevski et al., 2023) [Model]

Tzilivaki A, Kastellakis G, Poirazi P. (2019). Challenging the point neuron dogma: FS basket cells as 2-stage nonlinear integrators Nature communications. 10 [PubMed]

• Fast Spiking Basket cells (Tzilivaki et al 2019) [Model]

Ujfalussy BB, Makara JK, Lengyel M, Branco T. (2018). Global and Multiplexed Dendritic Computations under In Vivo-like Conditions. Neuron. 100 [PubMed]

• Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018) [Model]

Upchurch CM et al. (2022). Long-Term Inactivation of Sodium Channels as a Mechanism of Adaptation in CA1 Pyramidal Cells The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

• Long-Term Inactivation of Na+ Channels as a Mech of Adaptation in CA1 Pyr Cells (Upchurch et al '22) [Model]

Wang XD, Hao J, Poo MM , Zhang XH. (2006). How does a neuron perform subtraction? - Arithmetic rules of synaptic integration of excitation and inhibition Advances in Neural Networks-ISNN 2006. 3971

Yang GR, Murray JD, Wang XJ. (2016). A dendritic disinhibitory circuit mechanism for pathway-specific gating. Nature communications. 7 [PubMed]

• A dendritic disinhibitory circuit mechanism for pathway-specific gating (Yang et al. 2016) [Model]

Świetlik D, Białowąs J, Kusiak A, Cichońska D. (2018). A computational simulation of long-term synaptic potentiation inducing protocol processes with model of CA3 hippocampal microcircuit. Folia morphologica. 77 [PubMed]