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• PyRhO: A multiscale optogenetics simulation platform (Evans et al 2016) [Model]

Foutz TJ, Arlow RL, McIntyre CC. (2012). Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron. Journal of neurophysiology. 107 [PubMed]

• Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012) [Model]

Grossman N, Nikolic K, Toumazou C, Degenaar P. (2011). Modeling study of the light stimulation of a neuron cell with channelrhodopsin-2 mutants. IEEE transactions on bio-medical engineering. 58 [PubMed]

Williams JC et al. (2013). Computational optogenetics: empirically-derived voltage- and light-sensitive channelrhodopsin-2 model. PLoS computational biology. 9 [PubMed]

• Voltage and light-sensitive Channelrhodopsin-2 model (ChR2) (Williams et al. 2013) [Model]
• Voltage and light-sensitive Channelrhodopsin-2 model (ChR2-H134R) (Williams et al. 2013) (NEURON) [Model]