Aravanis AM et al. (2007). An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology. Journal of neural engineering. 4 [PubMed]
Berndt A, Prigge M, Gradmann D, Hegemann P. (2010). Two open states with progressive proton selectivities in the branched channelrhodopsin-2 photocycle. Biophysical journal. 98 [PubMed]
Berndt A et al. (2011). High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proceedings of the National Academy of Sciences of the United States of America. 108 [PubMed]
Deisseroth K et al. (2006). Next-generation optical technologies for illuminating genetically targeted brain circuits. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]
Ehlenbeck S, Gradmann D, Braun FJ, Hegemann P. (2002). Evidence for a light-induced H(+) conductance in the eye of the green alga Chlamydomonas reinhardtii. Biophysical journal. 82 [PubMed]
Ernst OP et al. (2008). Photoactivation of channelrhodopsin. The Journal of biological chemistry. 283 [PubMed]
Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K. (2009). Optical deconstruction of parkinsonian neural circuitry. Science (New York, N.Y.). 324 [PubMed]
Grossman N, Nikolic K, Toumazou C, Degenaar P. (2011). Modeling study of the light stimulation of a neuron cell with channelrhodopsin-2 mutants. IEEE transactions on bio-medical engineering. 58 [PubMed]
Grubb MS, Burrone J. (2010). Channelrhodopsin-2 localised to the axon initial segment. PloS one. 5 [PubMed]
Gunaydin LA et al. (2010). Ultrafast optogenetic control. Nature neuroscience. 13 [PubMed]
Han X et al. (2009). Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain. Neuron. 62 [PubMed]
Hegemann P, Ehlenbeck S, Gradmann D. (2005). Multiple photocycles of channelrhodopsin. Biophysical journal. 89 [PubMed]
Henderson JM, Federici T, Boulis N. (2009). Optogenetic neuromodulation. Neurosurgery. 64 [PubMed]
Hines ML, Carnevale NT. (2006). The NEURON Book.
Hu W et al. (2009). Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nature neuroscience. 12 [PubMed]
Kubelka P, Munk F. (1931). Ein beitrag zur optik der farbanstriche Z Tech Physik. 12
Lewis TL, Mao T, Arnold DB. (2011). A role for myosin VI in the localization of axonal proteins. PLoS biology. 9 [PubMed]
Lewis TL, Mao T, Svoboda K, Arnold DB. (2009). Myosin-dependent targeting of transmembrane proteins to neuronal dendrites. Nature neuroscience. 12 [PubMed]
Lin JY. (2011). A user's guide to channelrhodopsin variants: features, limitations and future developments. Experimental physiology. 96 [PubMed]
Lin JY, Lin MZ, Steinbach P, Tsien RY. (2009). Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophysical journal. 96 [PubMed]
Llewellyn ME, Thompson KR, Deisseroth K, Delp SL. (2010). Orderly recruitment of motor units under optical control in vivo. Nature medicine. 16 [PubMed]
Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ. (1995). A model of spike initiation in neocortical pyramidal neurons. Neuron. 15 [PubMed]
Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]
McIntyre CC, Foutz TJ. (2010). Optical stimulation of multi-compartment cable neuron models with channelrhodopsin-2 Society for Neuroscience 106.15.
McIntyre CC, Foutz TJ. (2011). Computational analysis of optogenetics: fiber optic stimulation of a channelrhodopsin-2 positive pyramidal neuron Society for Neuroscience 306.19.
McIntyre CC, Grill WM. (1999). Excitation of central nervous system neurons by nonuniform electric fields. Biophysical journal. 76 [PubMed]
McNeal DR. (1976). Analysis of a model for excitation of myelinated nerve. IEEE transactions on bio-medical engineering. 23 [PubMed]
Müller M, Bamann C, Bamberg E, Kühlbrandt W. (2011). Projection structure of channelrhodopsin-2 at 6 Å resolution by electron crystallography. Journal of molecular biology. 414 [PubMed]
Nagel G, Möckel B, Büldt G, Bamberg E. (1995). Functional expression of bacteriorhodopsin in oocytes allows direct measurement of voltage dependence of light induced H+ pumping. FEBS letters. 377 [PubMed]
Nagel G et al. (2003). Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proceedings of the National Academy of Sciences of the United States of America. 100 [PubMed]
Nikolic K et al. (2009). Photocycles of channelrhodopsin-2. Photochemistry and photobiology. 85 [PubMed]
Rickgauer JP, Tank DW. (2009). Two-photon excitation of channelrhodopsin-2 at saturation. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]
Ritter E, Stehfest K, Berndt A, Hegemann P, Bartl FJ. (2008). Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy. The Journal of biological chemistry. 283 [PubMed]
Schoenenberger P, Grunditz A, Rose T, Oertner TG. (2008). Optimizing the spatial resolution of Channelrhodopsin-2 activation. Brain cell biology. 36 [PubMed]
Schoenenberger P, Schärer YP, Oertner TG. (2011). Channelrhodopsin as a tool to investigate synaptic transmission and plasticity. Experimental physiology. 96 [PubMed]
Shu Y, Hasenstaub A, Duque A, Yu Y, McCormick DA. (2006). Modulation of intracortical synaptic potentials by presynaptic somatic membrane potential. Nature. 441 [PubMed]
Sparta DR et al. (2011). Construction of implantable optical fibers for long-term optogenetic manipulation of neural circuits. Nature protocols. 7 [PubMed]
Stuart G, Spruston N. (1998). Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]
Tønnesen J, Sørensen AT, Deisseroth K, Lundberg C, Kokaia M. (2009). Optogenetic control of epileptiform activity. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]
Vo-Dinh T. (2003). Biomedical Photonics Handbook.
Wang H et al. (2007). High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 104 [PubMed]
Weik M. (1997). Fiber Optics Standard Dictionary.
Yu Y, Shu Y, McCormick DA. (2008). Cortical action potential backpropagation explains spike threshold variability and rapid-onset kinetics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]
Zhang F, Aravanis AM, Adamantidis A, de Lecea L, Deisseroth K. (2007). Circuit-breakers: optical technologies for probing neural signals and systems. Nature reviews. Neuroscience. 8 [PubMed]
Zhang F et al. (2008). Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri. Nature neuroscience. 11 [PubMed]
Bingham CS et al. (2020). ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling Frontiers in Computational Neuroscience. 14
Evans BD, Jarvis S, Schultz SR, Nikolic K. (2016). PyRhO: A Multiscale Optogenetics Simulation Platform. Frontiers in neuroinformatics. 10 [PubMed]
Williams JC et al. (2013). Computational optogenetics: empirically-derived voltage- and light-sensitive channelrhodopsin-2 model. PLoS computational biology. 9 [PubMed]