De Schutter E. (2014). The dangers of plug-and-play simulation using shared models. Neuroinformatics. 12 [PubMed]

Fountas Z, Shanahan M. (2017). The role of cortical oscillations in a spiking neural network model of the basal ganglia. PloS one. 12 [PubMed]

• Cortical oscillations and the basal ganglia (Fountas & Shanahan 2017) [Model]

Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S. (2014). A flexible, interactive software tool for fitting the parameters of neuronal models. Frontiers in neuroinformatics. 8 [PubMed]

• Software (called Optimizer) for fitting neuronal models (Friedrich et al. 2014) [Model]

Guo T et al. (2016). Electrical activity of ON and OFF retinal ganglion cells: a modelling study. Journal of neural engineering. 13 [PubMed]

• Retinal ganglion cells responses and activity (Tsai et al 2012, Guo et al 2016) [Model]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

• L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Hendrickson EB, Edgerton JR, Jaeger D. (2011). The use of automated parameter searches to improve ion channel kinetics for neural modeling. Journal of computational neuroscience. 31 [PubMed]

Jȩdrzejewski-Szmek Z, Abrahao KP, Jȩdrzejewska-Szmek J, Lovinger DM, Blackwell KT. (2018). Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Frontiers in neuroinformatics. 12 [PubMed]

• Parameter optimization using CMA-ES (Jedrzejewski-Szmek et al 2018) [Model]

Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]

• Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) [Model]

Lytton WW et al. (2017). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM Journal of Research and Development (Computational Neuroscience special issue). 61(2/3)

• Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017) [Model]

Martínez-Cañada P, Morillas C, Pino B, Ros E, Pelayo F. (2016). A Computational Framework for Realistic Retina Modeling. International journal of neural systems. 26 [PubMed]

• COREM: configurable retina simulator (Martínez-Cañada et al., 2016) [Model]

Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]

• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Neymotin SA et al. (2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. Journal of neurophysiology. 117 [PubMed]

• Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017) [Model]

Rumbell T, Kozloski J. (2019). Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology. 15

• Control of oscillations and spontaneous firing in dopamine neurons (Rumbell & Kozloski 2019) [Model]

Rumbell TH et al. (2016). Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. Journal of computational neuroscience. 41 [PubMed]

• Rhesus Monkey Young and Aged L3 PFC Pyramidal Neurons (Rumbell et al. 2016) [Model]

Venkadesh S et al. (2018). Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. Frontiers in neuroinformatics. 12 [PubMed]

• Evolving simple models of diverse dynamics in hippocampal neuron types (Venkadesh et al 2018) [Model]

Wang YC et al. (2022). Multimodal parameter spaces of a complex multi-channel neuron model Frontiers in systems neuroscience. 16 [PubMed]

• Parallel Tempering MCMC on Liu et al 1998 (Wang et al 2022) [Model]