Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]

Iavarone E et al. (2019). Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. PLoS computational biology. 15 [PubMed]

• Thalamocortical relay neuron models constrained by experiment and optimization (Iavarone et al 2019) [Model]

Jȩdrzejewski-Szmek Z, Abrahao KP, Jȩdrzejewska-Szmek J, Lovinger DM, Blackwell KT. (2018). Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Frontiers in neuroinformatics. 12 [PubMed]

• Parameter optimization using CMA-ES (Jedrzejewski-Szmek et al 2018) [Model]

Kalmbach BE et al. (2018). h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex. Neuron. 100 [PubMed]

Masoli S, Ottaviani A, Casali S, D'Angelo E. (2020). Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity. PLoS computational biology. 16 [PubMed]

• Cerebellar Golgi cells, dendritic processing, and synaptic plasticity (Masoli et al 2020) [Model]

Masoli S et al. (2024). Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. Communications biology. 7 [PubMed]

• Human and mouse Purkinje cell models (Masoli et al., 2024) [Model]

Mosher CP et al. (2020). Cellular Classes in the Human Brain Revealed In Vivo by Heartbeat-Related Modulation of the Extracellular Action Potential Waveform. Cell reports. 30 [PubMed]

• Cellular classes revealed by heartbeat-related modulation of extracellular APs (Mosher et al 2020) [Model]

Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]

• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Neymotin SA et al. (2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. Journal of neurophysiology. 117 [PubMed]

• Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017) [Model]

Rumbell T, Kozloski J. (2019). Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology. 15

• Control of oscillations and spontaneous firing in dopamine neurons (Rumbell & Kozloski 2019) [Model]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife.

• GC model (Beining et al 2017) [Model]
• Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017) [Model]

Sun Z, Crompton D, Lankarany M, Skinner FK. (2023). Reduced oriens-lacunosum/moleculare cell model identifies biophysical current balances for in vivo theta frequency spiking resonance Frontiers in Neural Circuits. [PubMed]

• Hippocampus CA1 OLM cell multicompartment conductance-based model (Sun et al. 2023) [Model]