Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Clopath C, Ziegler L, Vasilaki E, Büsing L, Gerstner W. (2008). Tag-trigger-consolidation: a model of early and late long-term-potentiation and depression. PLoS computational biology. 4 [PubMed]

• Tag Trigger Consolidation (Clopath and Ziegler et al. 2008) [Model]

Cornelisse LN, van Elburg RA, Meredith RM, Yuste R, Mansvelder HD. (2007). High speed two-photon imaging of calcium dynamics in dendritic spines: consequences for spine calcium kinetics and buffer capacity. PloS one. 2 [PubMed]

• Determinants of fast calcium dynamics in dendritic spines and dendrites (Cornelisse et al. 2007) [Model]

Gerkin RC, Lau PM, Nauen DW, Wang YT, Bi GQ. (2007). Modular competition driven by NMDA receptor subtypes in spike-timing-dependent plasticity. Journal of neurophysiology. 97 [PubMed]

• STDP and NMDAR Subunits (Gerkin et al. 2007) [Model]

Graupner M, Brunel N. (2007). STDP in a bistable synapse model based on CaMKII and associated signaling pathways. PLoS computational biology. 3 [PubMed]

• CaMKII system exhibiting bistability with respect to calcium (Graupner and Brunel 2007) [Model]

Lindskog M, Kim M, Wikström MA, Blackwell KT, Kotaleski JH. (2006). Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation. PLoS computational biology. 2 [PubMed]

• Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006) [Model]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Frontiers in computational neuroscience. 4 [PubMed]

Migliore M, De Simone G, Migliore R. (2015). Effect of the initial synaptic state on the probability to induce long-term potentiation and depression. Biophysical journal. 108 [PubMed]

• Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015) [Model]

Miller P, Wang XJ. (2006). Stability of discrete memory states to stochastic fluctuations in neuronal systems. Chaos (Woodbury, N.Y.). 16 [PubMed]

Nakano T, Doi T, Yoshimoto J, Doya K. (2010). A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity. PLoS computational biology. 6 [PubMed]

• A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity (Nakano et al. 2010) [Model]

Sterratt DC, Groen MR, Meredith RM, van Ooyen A. (2012). Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. PLoS computational biology. 8 [PubMed]

• CA1 pyramidal neuron: synaptically-induced bAP predicts synapse location (Sterratt et al. 2012) [Model]

Urakubo H, Honda M, Froemke RC, Kuroda S. (2008). Requirement of an allosteric kinetics of NMDA receptors for spike timing-dependent plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008) [Model]