Anderson JC, Douglas RJ, Martin KA, Nelson JC. (1994). Map of the synapses formed with the dendrites of spiny stellate neurons of cat visual cortex. The Journal of comparative neurology. 341 [PubMed]

• Contrast invariance by LGN synaptic depression (Banitt et al. 2007) [Model]

Dunn NA, Lockery SR, Pierce-Shimomura JT, Conery JS. (2004). A neural network model of chemotaxis predicts functions of synaptic connections in the nematode Caenorhabditis elegans. Journal of computational neuroscience. 17 [PubMed]

Esposito U, Giugliano M, van Rossum M, Vasilaki E. (2014). Measuring symmetry, asymmetry and randomness in neural network connectivity. PloS one. 9 [PubMed]

• Statistics of symmetry measure for networks of neurons (Esposito et al. 2014) [Model]

Gal E et al. (2017). Rich cell-type-specific network topology in neocortical microcircuitry. Nature neuroscience. 20 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Karbowski J, Schindelman G, Cronin CJ, Seah A, Sternberg PW. (2008). Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics. Journal of computational neuroscience. 24 [PubMed]

Kim J, Leahy W, Shlizerman E. (2019). Neural Interactome: Interactive Simulation of a Neuronal System. Frontiers in computational neuroscience. 13 [PubMed]

• Neural Interactome: interactive simulation of a neuronal system (Kim et al 2019) [Model]

Mirzakhalili E, Gourgou E, Booth V, Epureanu B. (2017). Synaptic Impairment and Robustness of Excitatory Neuronal Networks with Different Topologies. Frontiers in neural circuits. 11 [PubMed]

• Synaptic Impairment, Robustness of Excitatory NNs w/ Different Topologies (Mirzakhalili et al 2017) [Model]

Morgan RJ, Soltesz I. (2008). Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

• Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

Morse TM, Lockery SR, Ferrée TC. (1998). Robust Spatial Navigation in a Robot Inspired by Chemotaxis in Caenorhabditis elegans Adaptive Behavior. 6

Nicoletti M et al. (2024). Biophysical modeling of the whole-cell dynamics of C. elegans motor and interneurons families. PloS one. 19 [PubMed]

• C.elegans motor and interneurons (Nicoletti at al. 2024) [Model]

Nicoletti M et al. (2019). Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD PloS one. 14 [PubMed]

• Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019) [Model]

Oda S, Toyoshima Y, de Bono M. (2017). Modulation of sensory information processing by a neuroglobin in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 114 [PubMed]

Palyanov A, Khayrulin S, Larson SD, Dibert A. (2011). Towards a virtual C. elegans: a framework for simulation and visualization of the neuromuscular system in a 3D physical environment. In silico biology. 11 [PubMed]

• Towards a virtual C. elegans (Palyanov et al. 2012) [Model]

Rakowski F, Karbowski J. (2017). Optimal synaptic signaling connectome for locomotory behavior in Caenorhabditis elegans: Design minimizing energy cost. PLoS computational biology. 13 [PubMed]

• Optimal synaptic assignment for locomotory behavior in C. elegans (Rakowski & Karbowski 2017) [Model]

Reimann MW, Horlemann AL, Ramaswamy S, Muller EB, Markram H. (2017). Morphological Diversity Strongly Constrains Synaptic Connectivity and Plasticity. Cerebral cortex (New York, N.Y. : 1991). 27 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Roberts A et al. (2014). Can simple rules control development of a pioneer vertebrate neuronal network generating behavior? The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

• Model of the Xenopus tadpole swimming spinal network (Roberts et al. 2014) [Model]