Acker CD, Antic SD. (2009). Quantitative assessment of the distributions of membrane conductances involved in action potential backpropagation along basal dendrites. Journal of neurophysiology. 101 [PubMed]

• Excitability of PFC Basal Dendrites (Acker and Antic 2009) [Model]

Badoual M et al. (2006). Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. International journal of neural systems. 16 [PubMed]

• Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006) [Model]

Baker JL, Perez-Rosello T, Migliore M, Barrionuevo G, Ascoli GA. (2011). A computer model of unitary responses from associational/commissural and perforant path synapses in hippocampal CA3 pyramidal cells. Journal of computational neuroscience. 31 [PubMed]

• A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010) [Model]

Brecht M, Roth A, Sakmann B. (2003). Dynamic receptive fields of reconstructed pyramidal cells in layers 3 and 2 of rat somatosensory barrel cortex. The Journal of physiology. 553 [PubMed]

Cai Y, Gavornik JP, Cooper LN, Yeung LC, Shouval HZ. (2007). Effect of stochastic synaptic and dendritic dynamics on synaptic plasticity in visual cortex and hippocampus. Journal of neurophysiology. 97 [PubMed]

Domanski APF, Booker SA, Wyllie DJA, Isaac JTR, Kind PC. (2019). Cellular and synaptic phenotypes lead to disrupted information processing in Fmr1-KO mouse layer 4 barrel cortex. Nature communications. 10 [PubMed]

• Disrupted information processing in Fmr1-KO mouse layer 4 barrel cortex (Domanski et al 2019) [Model]

Egger R et al. (2020). Cortical Output Is Gated by Horizontally Projecting Neurons in the Deep Layers Neuron. 105

• Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020) [Model]

Egger R et al. (2015). Robustness of sensory-evoked excitation is increased by inhibitory inputs to distal apical tuft dendrites. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]

• Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015) [Model]

Eyal G et al. (2018). Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Frontiers in cellular neuroscience. 12 [PubMed]

• Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018) [Model]

Helmstaedter M, Staiger JF, Sakmann B, Feldmeyer D. (2008). Efficient recruitment of layer 2/3 interneurons by layer 4 input in single columns of rat somatosensory cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) [Model]

Huang C, Zeldenrust F, Celikel T. (2022). Cortical Representation of Touch in Silico Neuroinformatics. 20 [PubMed]

• Realistic barrel cortical column - Matlab (Huang et al., 2022) [Model]
• Realistic barrel cortical column - NetPyNE (Huang et al., 2022) [Model]

Iannella N, Tanaka S. (2006). Synaptic efficacy cluster formation across the dendrite via STDP. Neuroscience letters. 403 [PubMed]

Jones SR, Pritchett DL, Stufflebeam SM, Hämäläinen M, Moore CI. (2007). Neural correlates of tactile detection: a combined magnetoencephalography and biophysically based computational modeling study. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• MEG of Somatosensory Neocortex (Jones et al. 2007) [Model]

Kremer Y, Léger JF, Goodman D, Brette R, Bourdieu L. (2011). Late emergence of the vibrissa direction selectivity map in the rat barrel cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• Late emergence of the whisker direction selectivity map in rat barrel cortex (Kremer et al. 2011) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Potjans TC, Diesmann M. (2014). The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cerebral cortex (New York, N.Y. : 1991). 24 [PubMed]

• A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]

Ramaswamy S et al. (2015). The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in neural circuits. 9 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Reimann MW, Horlemann AL, Ramaswamy S, Muller EB, Markram H. (2017). Morphological Diversity Strongly Constrains Synaptic Connectivity and Plasticity. Cerebral cortex (New York, N.Y. : 1991). 27 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Reimann MW, King JG, Muller EB, Ramaswamy S, Markram H. (2015). An algorithm to predict the connectome of neural microcircuits. Frontiers in computational neuroscience. 9 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Traub RD et al. (2005). Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. Journal of neurophysiology. 93 [PubMed]

• A single column thalamocortical network model (Traub et al 2005) [Model]
• Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]

Veredas FJ, Vico FJ, Alonso JM. (2005). Factors determining the precision of the correlated firing generated by a monosynaptic connection in the cat visual pathway. The Journal of physiology. 567 [PubMed]

van Ooyen A et al. (2014). Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PloS one. 9 [PubMed]

• NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014) [Model]