A comparative computer simulation of dendritic morphology (Donohue and Ascoli 2008)


Donohue DE, Ascoli GA. (2008). A comparative computer simulation of dendritic morphology. PLoS computational biology. 4 [PubMed]

See more from authors: Donohue DE · Ascoli GA

References and models cited by this paper

Allendoerfer KL et al. (1994). Regulation of neurotrophin receptors during the maturation of the mammalian visual system. The Journal of neuroscience : the official journal of the Society for Neuroscience. 14 [PubMed]

Ascoli GA. (2006). Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nature reviews. Neuroscience. 7 [PubMed]

Ascoli GA, Donohue DE. (2005). Models of neuronal outgrowth Databasing the Brain: From Data to Knowledge.

Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Ascoli GA, Krichmar JL. (2000). L-Neuron: a modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing. 32

Ascoli GA, Krichmar JL, Scorcioni R, Nasuto SJ, Senft SL. (2001). Computer generation and quantitative morphometric analysis of virtual neurons. Anatomy and embryology. 204 [PubMed]

Ascoli GA, Scorcioni R, Donohue DE. (2002). Generation and description of neuronal morphology using L-Neuron: A case study Computational Neuroanatomy: Principles and Methods.

Baas PW. (1997). Microtubules and axonal growth. Current opinion in cell biology. 9 [PubMed]

Baker RE, Dijkhuizen PA, Van Pelt J, Verhaagen J. (1998). Growth of pyramidal, but not non-pyramidal, dendrites in long-term organotypic explants of neonatal rat neocortex chronically exposed to neurotrophin-3. The European journal of neuroscience. 10 [PubMed]

Baker RE, Van Pelt J. (1997). Cocultured, but not isolated, cortical explants display normal dendritic development: a long-term quantitative study. Brain research. Developmental brain research. 98 [PubMed]

Buckmaster PS, Alonso A, Canfield DR, Amaral DG. (2004). Dendritic morphology, local circuitry, and intrinsic electrophysiology of principal neurons in the entorhinal cortex of macaque monkeys. The Journal of comparative neurology. 470 [PubMed]

Buettner HM. (1995). Computer simulation of nerve growth cone filopodial dynamics for visualization and analysis. Cell motility and the cytoskeleton. 32 [PubMed]

Buettner HM, Pittman RN, Ivins JK. (1994). A model of neurite extension across regions of nonpermissive substrate: simulations based on experimental measurement of growth cone motility and filopodial dynamics. Developmental biology. 163 [PubMed]

Burke RE, Marks WB, Ulfhake B. (1992). A parsimonious description of motoneuron dendritic morphology using computer simulation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 12 [PubMed]

Condron BG, Zinn K. (1997). Regulated neurite tension as a mechanism for determination of neuronal arbor geometries in vivo. Current biology : CB. 7 [PubMed]

Donohue DE, Ascoli GA. (2005). Local Diameter Fully Constrains Dendritic Size in Basal but not Apical Trees of CA1 Pyramidal Neurons J Comp Neurosci. 19

Gallo G, Letourneau PC. (2000). Neurotrophins and the dynamic regulation of the neuronal cytoskeleton. Journal of neurobiology. 44 [PubMed]

Gomes RA, Hampton C, El-Sabeawy F, Sabo SL, McAllister AK. (2006). The dynamic distribution of TrkB receptors before, during, and after synapse formation between cortical neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Goodhill GJ, Urbach JS. (1999). Theoretical analysis of gradient detection by growth cones. Journal of neurobiology. 41 [PubMed]

Hely TA, Graham B, Ooyen AV. (2001). A computational model of dendrite elongation and branching based on MAP2 phosphorylation. Journal of theoretical biology. 210 [PubMed]

Hillman DE. (1979). Neuronal shape parameters and substructures as a basis of neuronal form. The Neurosciences (4th Study Program).

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]

Häusser M, Mel B. (2003). Dendrites: bug or feature? Current opinion in neurobiology. 13 [PubMed]

Kobayashi N, Mundel P. (1998). A role of microtubules during the formation of cell processes in neuronal and non-neuronal cells. Cell and tissue research. 291 [PubMed]

Koch C, Segev I. (2000). The role of single neurons in information processing. Nature neuroscience. 3 Suppl [PubMed]

Kryl D et al. (1999). Subcellular localization of full-length and truncated Trk receptor isoforms in polarized neurons and epithelial cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Luo L. (2002). Actin cytoskeleton regulation in neuronal morphogenesis and structural plasticity. Annual review of cell and developmental biology. 18 [PubMed]

Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]

McAllister AK, Katz LC, Lo DC. (1997). Opposing roles for endogenous BDNF and NT-3 in regulating cortical dendritic growth. Neuron. 18 [PubMed]

McAllister AK, Lo DC, Katz LC. (1995). Neurotrophins regulate dendritic growth in developing visual cortex. Neuron. 15 [PubMed]

Migliore M et al. (2003). ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics. 1 [PubMed]

Petersen N, Morita H, Nielsen J. (1998). Evaluation of reciprocal inhibition of the soleus H-reflex during tonic plantar flexion in man. Journal of neuroscience methods. 84 [PubMed]

Redmond L, Kashani AH, Ghosh A. (2002). Calcium regulation of dendritic growth via CaM kinase IV and CREB-mediated transcription. Neuron. 34 [PubMed]

Samsonovich AV, Ascoli GA. (2003). Statistical morphological analysis of hippocampal principal neurons indicates cell-specific repulsion of dendrites from their own cell. Journal of neuroscience research. 71 [PubMed]

Samsonovich AV, Ascoli GA. (2005). Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: A hidden Markov model. Hippocampus. 15 [PubMed]

Samsonovich AV, Ascoli GA. (2006). Morphological homeostasis in cortical dendrites. Proceedings of the National Academy of Sciences of the United States of America. 103 [PubMed]

Schaefer AT, Larkum ME, Sakmann B, Roth A. (2003). Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. Journal of neurophysiology. 89 [PubMed]

Stepanyants A, Tamás G, Chklovskii DB. (2004). Class-specific features of neuronal wiring. Neuron. 43 [PubMed]

Tongiorgi E et al. (2004). Brain-derived neurotrophic factor mRNA and protein are targeted to discrete dendritic laminas by events that trigger epileptogenesis. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Uemura E, Carriquiry A, Kliemann W, Goodwin J. (1995). Mathematical modeling of dendritic growth in vitro. Brain research. 671 [PubMed]

Verhage M et al. (2000). Synaptic assembly of the brain in the absence of neurotransmitter secretion. Science (New York, N.Y.). 287 [PubMed]

Vetter P, Roth A, Häusser M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of neurophysiology. 85 [PubMed]

Zhou FQ, Waterman-Storer CM, Cohan CS. (2002). Focal loss of actin bundles causes microtubule redistribution and growth cone turning. The Journal of cell biology. 157 [PubMed]

van Pelt J, Dityatev AE, Uylings HB. (1997). Natural variability in the number of dendritic segments: model-based inferences about branching during neurite outgrowth. The Journal of comparative neurology. 387 [PubMed]

This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.