Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]
Ascoli GA, Krichmar JL. (2000). L-Neuron: a modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing. 32
Barbier A, Galin E. (2004). Fast distance computation between a point and cylinders, cones, line-swept spheres and cone-spheres, line-swept spheres And cone-spheres Journal Of Graphics Tools. 9
Batista VH, Millman DL, Pion S, Singler J. (2010). Parallel geometric algorithms for multi-core computers Computational Geometry. 43
Breen DE. (1991). Constructive cubes: CSG evaluation for display using discrete 3D scalar data sets Eurographics. 91
Cuntz H, Forstner F, Borst A, Häusser M. (2010). One rule to grow them all: a general theory of neuronal branching and its practical application. PLoS computational biology. 6 [PubMed]
Donohue DE, Ascoli GA. (2011). Automated reconstruction of neuronal morphology: an overview. Brain research reviews. 67 [PubMed]
Dronne MA, Descombes S, Grenier G, Gilquin H. (2009). Examples of the influence of the geometry on the propagation of progressive waves Mathematical And Computer Modelling. 49(11)
Franks KM, Bartol TM, Sejnowski TJ. (2002). A Monte Carlo model reveals independent signaling at central glutamatergic synapses. Biophysical journal. 83 [PubMed]
Johansson G, Carr H. (2006). Accelerating marching cubes with graphics hardware CASCON'06: Proceedings of the 2006 Conference of the Center for Advanced Studies on Collaborative Research. 2006
Lengyel E. (2010). Transition cells for dynamic multiresolution marching cubes Journal of Graphics, GPU, and Game Tools. 15(2)
Lorensen HE. (1987). Marching cubes: a high resolution 3D surface construction algorithm ACM Siggraph Computer Graphics. 21
Markram H et al. (2012). A neuron membrane mesh representation for visualization of electrophysiological simulations IEEE Transactions on Visualization and Computer Graphics. 18(2)
Moore PK, Flaherty JE. (1992). Adaptive local overlapping grid methods for parabolic systems in two space dimensions Journal of Computational Physics. 98(1)
Nikolenko V, Poskanzer KE, Yuste R. (2007). Two-photon photostimulation and imaging of neural circuits. Nature methods. 4 [PubMed]
Noguchi J, Matsuzaki M, Ellis-Davies GC, Kasai H. (2005). Spine-neck geometry determines NMDA receptor-dependent Ca2+ signaling in dendrites. Neuron. 46 [PubMed]
Poirazi P, Brannon T, Mel BW. (2003). Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron. 37 [PubMed]
Rodriguez A et al. (2003). Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images. Methods (San Diego, Calif.). 30 [PubMed]
van_Rossen S, Baranowski M. (2011). Real-time constructive solid geometry Game Development Tools.
Grein S, Stepniewski M, Reiter S, Knodel MM, Queisser G. (2014). 1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time. Frontiers in neuroinformatics. 8 [PubMed]
McDougal RA, Shepherd GM. (2015). 3D-printer visualization of neuron models. Frontiers in neuroinformatics. 9 [PubMed]
Mörschel K, Breit M, Queisser G. (2017). Generating Neuron Geometries for Detailed Three-Dimensional Simulations Using AnaMorph. Neuroinformatics. 15 [PubMed]
Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. (2016). Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Frontiers in pharmacology. 7 [PubMed]
Neymotin SA et al. (2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience. 316 [PubMed]
Neymotin SA et al. (2015). Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural computation. 27 [PubMed]