Reconstructed neuron (cerebellar, hippocampal, striatal) sims using predicted diameters (Reed et al)


Reed JD, Blackwell KT. (2021). Prediction of Neural Diameter From Morphology to Enable Accurate Simulation. Frontiers in neuroinformatics. 15 [PubMed]

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References and models cited by this paper

Alonso LM, Marder E. (2019). Visualization of currents in neural models with similar behavior and different conductance densities. eLife. 8 [PubMed]

Anwar H et al. (2014). Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Frontiers in cellular neuroscience. 8 [PubMed]

Ascoli GA. (2015). Sharing Neuron Data: Carrots, Sticks, and Digital Records. PLoS biology. 13 [PubMed]

Ascoli GA, Maraver P, Nanda S, Polavaram S, Armañanzas R. (2017). Win-win data sharing in neuroscience. Nature methods. 14 [PubMed]

Bird AD, Cuntz H. (2016). Optimal Current Transfer in Dendrites. PLoS computational biology. 12 [PubMed]

Chitwood RA, Hubbard A, Jaffe DB. (1999). Passive electrotonic properties of rat hippocampal CA3 interneurones. The Journal of physiology. 515 ( Pt 3) [PubMed]

Chéreau R, Saraceno GE, Angibaud J, Cattaert D, Nägerl UV. (2017). Superresolution imaging reveals activity-dependent plasticity of axon morphology linked to changes in action potential conduction velocity. Proceedings of the National Academy of Sciences of the United States of America. 114 [PubMed]

Cullheim S, Fleshman JW, Glenn LL, Burke RE. (1987). Membrane area and dendritic structure in type-identified triceps surae alpha motoneurons. The Journal of comparative neurology. 255 [PubMed]

Cuntz H, Borst A, Segev I. (2007). Optimization principles of dendritic structure. Theoretical biology & medical modelling. 4 [PubMed]

Cuntz H, Forstner F, Borst A, Häusser M. (2010). One rule to grow them all: a general theory of neuronal branching and its practical application. PLoS computational biology. 6 [PubMed]

D'Angelo E et al. (2013). Realistic modeling of neurons and networks: towards brain simulation. Functional neurology. 28 [PubMed]

Donohue DE, Ascoli GA. (2008). A comparative computer simulation of dendritic morphology. PLoS computational biology. 4 [PubMed]

Einevoll GT et al. (2019). The Scientific Case for Brain Simulations. Neuron. 102 [PubMed]

Fan X, Markram H. (2019). A Brief History of Simulation Neuroscience. Frontiers in neuroinformatics. 13 [PubMed]

Firmin L et al. (2014). Axon diameters and conduction velocities in the macaque pyramidal tract. Journal of neurophysiology. 112 [PubMed]

Golding NL, Mickus TJ, Katz Y, Kath WL, Spruston N. (2005). Factors mediating powerful voltage attenuation along CA1 pyramidal neuron dendrites. The Journal of physiology. 568 [PubMed]

Goodliffe JW et al. (2018). Differential changes to D1 and D2 medium spiny neurons in the 12-month-old Q175+/- mouse model of Huntington's Disease. PloS one. 13 [PubMed]

Groen MR et al. (2014). Development of dendritic tonic GABAergic inhibition regulates excitability and plasticity in CA1 pyramidal neurons. Journal of neurophysiology. 112 [PubMed]

Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A. (2014). Competitive dynamics during resource-driven neurite outgrowth. PloS one. 9 [PubMed]

Koene RA et al. (2009). NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7 [PubMed]

Krichmar JL, Velasquez D, Ascoli GA. (2006). Effects of beta-catenin on dendritic morphology and simulated firing patterns in cultured hippocampal neurons. The Biological bulletin. 211 [PubMed]

Kubota Y et al. (2011). Conserved properties of dendritic trees in four cortical interneuron subtypes. Scientific reports. 1 [PubMed]

Li L, Gervasi N, Girault JA. (2015). Dendritic geometry shapes neuronal cAMP signalling to the nucleus. Nature communications. 6 [PubMed]

Lindroos R et al. (2018). Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales-Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2. Frontiers in neural circuits. 12 [PubMed]

Luczak V, Blackwell KT, Abel T, Girault JA, Gervasi N. (2017). Dendritic diameter influences the rate and magnitude of hippocampal cAMP and PKA transients during ß-adrenergic receptor activation. Neurobiology of learning and memory. 138 [PubMed]

Marder E. (2012). Neuromodulation of neuronal circuits: back to the future. Neuron. 76 [PubMed]

Marder E, O'Leary T, Shruti S. (2014). Neuromodulation of circuits with variable parameters: single neurons and small circuits reveal principles of state-dependent and robust neuromodulation. Annual review of neuroscience. 37 [PubMed]

Megías M, Emri Z, Freund TF, Gulyás AI. (2001). Total number and distribution of inhibitory and excitatory synapses on hippocampal CA1 pyramidal cells. Neuroscience. 102 [PubMed]

RALL W. (1962). Electrophysiology of a dendritic neuron model. Biophysical journal. 2 [PubMed]

Scorcioni R, Lazarewicz MT, Ascoli GA. (2004). Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. The Journal of comparative neurology. 473 [PubMed]

Shah MM, Hammond RS, Hoffman DA. (2010). Dendritic ion channel trafficking and plasticity. Trends in neurosciences. 33 [PubMed]

Zhou WL et al. (2015). Branch specific and spike-order specific action potential invasion in basal, oblique, and apical dendrites of cortical pyramidal neurons. Neurophotonics. 2 [PubMed]

Zomorrodi R, Ferecskó AS, Kovács K, Kröger H, Timofeev I. (2010). Analysis of morphological features of thalamocortical neurons from the ventroposterolateral nucleus of the cat. The Journal of comparative neurology. 518 [PubMed]

van Elburg RA, van Ooyen A. (2010). Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS computational biology. 6 [PubMed]

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