Hines M. (1984). Efficient computation of branched nerve equations. International journal of bio-medical computing. 15 [PubMed]

Hines ML. (1994). The NEURON simulation program Neural Network Simulation Environments.

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Hines ML, Carnevale NT. (2008). Translating network models to parallel hardware in NEURON. Journal of neuroscience methods. 169 [PubMed]

• Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008) [Model]

Korf RE. (1998). A complete anytime algorithm for number partitioning Artif Intell. 106

Markram H. (2006). The blue brain project. Nature reviews. Neuroscience. 7 [PubMed]

Mascagni MV, Sherman AS. (1998). Numerical methods for neuronal modelling. Methods in Neuronal Modeling From Synapses to Networks, 2nd Edition.

Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. (2006). Parallel network simulations with NEURON. Journal of computational neuroscience. 21 [PubMed]

• Parallel network simulations with NEURON (Migliore et al 2006) [Model]

Santhakumar V, Aradi I, Soltesz I. (2005). Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. Journal of neurophysiology. 93 [PubMed]

• Dentate gyrus network model (Santhakumar et al 2005) [Model]
• Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007) [Model]

Traub RD et al. (2005). Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. Journal of neurophysiology. 93 [PubMed]

• A single column thalamocortical network model (Traub et al 2005) [Model]
• Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

• Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016) [Model]

Cisi RR, Kohn AF. (2008). Simulation system of spinal cord motor nuclei and associated nerves and muscles, in a Web-based architecture. Journal of computational neuroscience. 25 [PubMed]

• Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008) [Model]

Forrest MD. (2015). Simulation of alcohol action upon a detailed Purkinje neuron model and a simpler surrogate model that runs >400 times faster. BMC neuroscience. 16 [PubMed]

• Alcohol action in a detailed Purkinje neuron model and an efficient simplified model (Forrest 2015) [Model]

Hines ML, Markram H, Schürmann F. (2008). Fully implicit parallel simulation of single neurons. Journal of computational neuroscience. 25 [PubMed]

• Fully Implicit Parallel Simulation of Single Neurons (Hines et al. 2008) [Model]

Kozloski J, Wagner J. (2011). An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Frontiers in neuroinformatics. 5 [PubMed]

Kumaravelu K, Oza CS, Behrend CE, Grill WM. (2018). Model-based deconstruction of cortical evoked potentials generated by subthalamic nucleus deep brain stimulation. Journal of neurophysiology. 120 [PubMed]

• Deconstruction of cortical evoked potentials generated by subthalamic DBS (Kumaravelu et al 2018) [Model]

Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural computation. 28 [PubMed]

• Parallelizing large networks in NEURON (Lytton et al. 2016) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Schneider CJ, Cuntz H, Soltesz I. (2014). Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS computational biology. 10 [PubMed]

• Generation of granule cell dendritic morphology (Schneider et al. 2014) [Model]

Tikidji-Hamburyan RA, El-Ghazawi TA, Narayana V, Bozkus Z. (2017). Software for Brain Network Simulations: A Comparative Study Front. Neuroinform..

• Brain networks simulators - a comparative study (Tikidji-Hamburyan et al 2017) [Model]